miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28043 3' -56.1 NC_005887.1 + 13906 0.68 0.476456
Target:  5'- -aAGCCGaCGaagggUCaGCUUCGCGAGCAc -3'
miRNA:   3'- caUCGGCaGCa----GGcUGAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 38373 0.68 0.446199
Target:  5'- -aAGCaCGcCGUCCucgUUCGCGAGCAa -3'
miRNA:   3'- caUCG-GCaGCAGGcugAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 40591 0.68 0.446199
Target:  5'- -gAGCaUGUCGaggaUCGGCUUCGCGAGUu -3'
miRNA:   3'- caUCG-GCAGCa---GGCUGAAGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 35067 0.68 0.446199
Target:  5'- --uGCCGUCGUCggcgggcgCGACUUCGaagucgucuuCGGGCGg -3'
miRNA:   3'- cauCGGCAGCAG--------GCUGAAGC----------GCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 22994 0.69 0.426634
Target:  5'- --cGCCGcacgCGUCUG-CUgCGCGAGCAu -3'
miRNA:   3'- cauCGGCa---GCAGGCuGAaGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 13638 0.69 0.417044
Target:  5'- --cGCgUGUCGUUCGACgacuacgacgauUUCGCGGGCGu -3'
miRNA:   3'- cauCG-GCAGCAGGCUG------------AAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 25094 0.69 0.407587
Target:  5'- --cGCCGcCGUCgGAUUUCGCGAcCGg -3'
miRNA:   3'- cauCGGCaGCAGgCUGAAGCGCUcGU- -5'
28043 3' -56.1 NC_005887.1 + 19155 0.7 0.389082
Target:  5'- aGUAGCCGcCc-CCGGCcgugaUCGCGAGCGc -3'
miRNA:   3'- -CAUCGGCaGcaGGCUGa----AGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 13858 0.7 0.345294
Target:  5'- ---cCCGUCG-CUGACUUCGUGaAGCAg -3'
miRNA:   3'- caucGGCAGCaGGCUGAAGCGC-UCGU- -5'
28043 3' -56.1 NC_005887.1 + 28160 0.7 0.345294
Target:  5'- -aGGCCG-CGcCCGACagCGCGuGCAa -3'
miRNA:   3'- caUCGGCaGCaGGCUGaaGCGCuCGU- -5'
28043 3' -56.1 NC_005887.1 + 26705 0.71 0.328797
Target:  5'- -cAGCCGUCG-CgCGGC--CGCGGGCAg -3'
miRNA:   3'- caUCGGCAGCaG-GCUGaaGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 24319 0.72 0.268698
Target:  5'- -cGGCCGUCaGUCCGGCg-CGCGuaAGCGc -3'
miRNA:   3'- caUCGGCAG-CAGGCUGaaGCGC--UCGU- -5'
28043 3' -56.1 NC_005887.1 + 26572 0.72 0.259813
Target:  5'- --uGCCGUCGUCCuccugcuuguagacGGCgccgUUCGCGAGCu -3'
miRNA:   3'- cauCGGCAGCAGG--------------CUG----AAGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 34939 0.75 0.184703
Target:  5'- --uGCCGUCG-CCGGCUUCgaacucgGCGGGCGu -3'
miRNA:   3'- cauCGGCAGCaGGCUGAAG-------CGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 41467 0.77 0.125464
Target:  5'- -aGGCCGccugacUCGUCCGGCggCGCGGGCc -3'
miRNA:   3'- caUCGGC------AGCAGGCUGaaGCGCUCGu -5'
28043 3' -56.1 NC_005887.1 + 18549 0.78 0.118549
Target:  5'- gGUGGgCGgCGgcgCCGGCUUCGCGGGCGa -3'
miRNA:   3'- -CAUCgGCaGCa--GGCUGAAGCGCUCGU- -5'
28043 3' -56.1 NC_005887.1 + 19604 1.08 0.000691
Target:  5'- uGUAGCCGUCGUCCGACUUCGCGAGCAg -3'
miRNA:   3'- -CAUCGGCAGCAGGCUGAAGCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.