miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28045 5' -51.8 NC_005887.1 + 33712 0.66 0.827507
Target:  5'- uGGCGCGgcggucgaucugcUCGAucGCGGCgaGGauCAGCGCGc -3'
miRNA:   3'- -UCGCGU-------------AGUU--UGCCGaaCC--GUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 7578 0.66 0.828462
Target:  5'- aGGCGUAUcCGGACGGCaucgcguaaGCGGCGCc -3'
miRNA:   3'- -UCGCGUA-GUUUGCCGaac------CGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 40235 0.71 0.528904
Target:  5'- cAGCGUGcCGagcGACGGCUUcGGCAAUAUGu -3'
miRNA:   3'- -UCGCGUaGU---UUGCCGAA-CCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 39018 0.67 0.723709
Target:  5'- cGCGCAgUCGAcgGCGGCUUGcuGCGGagucaGCGa -3'
miRNA:   3'- uCGCGU-AGUU--UGCCGAAC--CGUUg----UGC- -5'
28045 5' -51.8 NC_005887.1 + 36521 0.72 0.453192
Target:  5'- cGCaGCAUCGGGCGGCggcaGGUAuuuCGCGa -3'
miRNA:   3'- uCG-CGUAGUUUGCCGaa--CCGUu--GUGC- -5'
28045 5' -51.8 NC_005887.1 + 35080 0.68 0.69428
Target:  5'- gGGCGCGacuucgaagucgucuUCGGGCGGUUgaauuucgagGGCGggGCGCGg -3'
miRNA:   3'- -UCGCGU---------------AGUUUGCCGAa---------CCGU--UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 28214 0.76 0.274841
Target:  5'- cGCGCGUCucGGCGGuUUUGaGCAGCGCGc -3'
miRNA:   3'- uCGCGUAGu-UUGCC-GAAC-CGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 29660 0.66 0.827507
Target:  5'- cGCGCGgcgCGAgguagcacagcugGCGcuuGCUUGGCAgcuGCACGc -3'
miRNA:   3'- uCGCGUa--GUU-------------UGC---CGAACCGU---UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 22823 0.66 0.818816
Target:  5'- cGGCGCAUcCGAACGuGCUcaaccGGCAGaucuCGg -3'
miRNA:   3'- -UCGCGUA-GUUUGC-CGAa----CCGUUgu--GC- -5'
28045 5' -51.8 NC_005887.1 + 1494 0.68 0.699982
Target:  5'- cGGCGC-UCGcGCGGCgcGGCcgugcggAACACGu -3'
miRNA:   3'- -UCGCGuAGUuUGCCGaaCCG-------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 26705 0.68 0.712458
Target:  5'- cAGC-CGUCGcGCGGCcgcgGGCAGCuCGa -3'
miRNA:   3'- -UCGcGUAGUuUGCCGaa--CCGUUGuGC- -5'
28045 5' -51.8 NC_005887.1 + 34281 0.68 0.712458
Target:  5'- uGCGCAugccgUCGccguGCGGCUgacugcgGGCGGCAaCGg -3'
miRNA:   3'- uCGCGU-----AGUu---UGCCGAa------CCGUUGU-GC- -5'
28045 5' -51.8 NC_005887.1 + 38168 0.68 0.712458
Target:  5'- gAGCGCGaaaUAGGCGGUgu-GCAGCAUGg -3'
miRNA:   3'- -UCGCGUa--GUUUGCCGaacCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 14195 0.68 0.712458
Target:  5'- cGCGCuGUCGGgcGCGGCcucggacagGGCGGCGCc -3'
miRNA:   3'- uCGCG-UAGUU--UGCCGaa-------CCGUUGUGc -5'
28045 5' -51.8 NC_005887.1 + 4667 0.68 0.689707
Target:  5'- cGCGCAgaccgcugcgCAGACGGCgagGGUcugaugGGCGCGc -3'
miRNA:   3'- uCGCGUa---------GUUUGCCGaa-CCG------UUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 10156 0.69 0.608796
Target:  5'- gAGCGaCGUCu-ACGGCU-GGCAucggcauccggACGCGa -3'
miRNA:   3'- -UCGC-GUAGuuUGCCGAaCCGU-----------UGUGC- -5'
28045 5' -51.8 NC_005887.1 + 2544 0.7 0.601856
Target:  5'- aGGCGCuGUCGGGCGGCUacugcuuccgccgcaUGGCcgugaGCGg -3'
miRNA:   3'- -UCGCG-UAGUUUGCCGA---------------ACCGuug--UGC- -5'
28045 5' -51.8 NC_005887.1 + 19724 0.7 0.597236
Target:  5'- gGGUGUcgCGGAucUGGUgcaUUGGCGGCACGa -3'
miRNA:   3'- -UCGCGuaGUUU--GCCG---AACCGUUGUGC- -5'
28045 5' -51.8 NC_005887.1 + 15621 0.7 0.597236
Target:  5'- cGCGCAgCAGGCGGCcgGGCu-CGCc -3'
miRNA:   3'- uCGCGUaGUUUGCCGaaCCGuuGUGc -5'
28045 5' -51.8 NC_005887.1 + 15158 0.66 0.808953
Target:  5'- aGGCGC-UC-GACGGCaUGGCGAagUACc -3'
miRNA:   3'- -UCGCGuAGuUUGCCGaACCGUU--GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.