miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28046 3' -51.8 NC_005887.1 + 36641 0.66 0.835933
Target:  5'- --cGUCGAAGCGG--UCUUugCgaaaucggugucGCCGa -3'
miRNA:   3'- uuaCAGCUUCGCCuaAGAGugG------------UGGC- -5'
28046 3' -51.8 NC_005887.1 + 31031 0.66 0.835933
Target:  5'- --cGUCGcgguuGCGGcg-CUCGCUGCCGa -3'
miRNA:   3'- uuaCAGCuu---CGCCuaaGAGUGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 21458 0.66 0.790774
Target:  5'- --cGUCGAgcacggucAGCGGGUcggguuUCUCgaccuaucucgcaucGCCGCCGg -3'
miRNA:   3'- uuaCAGCU--------UCGCCUA------AGAG---------------UGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 32863 0.67 0.775158
Target:  5'- cAUGcCGggGuCGGccgggucGUUCgUCGCCACCGu -3'
miRNA:   3'- uUACaGCuuC-GCC-------UAAG-AGUGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 14234 0.67 0.765609
Target:  5'- -cUGuUCGgcGCGGcAUccgaUCUUGCCGCCGg -3'
miRNA:   3'- uuAC-AGCuuCGCC-UA----AGAGUGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 1548 0.67 0.765609
Target:  5'- --cGUCG-AGCGGcg-CgUCGCCGCCa -3'
miRNA:   3'- uuaCAGCuUCGCCuaaG-AGUGGUGGc -5'
28046 3' -51.8 NC_005887.1 + 16647 0.67 0.73295
Target:  5'- -cUGUgGAAGCGGAgaauaUCUCGaauggaacCCACUGa -3'
miRNA:   3'- uuACAgCUUCGCCUa----AGAGU--------GGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 16386 0.68 0.676465
Target:  5'- aAGUGUCGAAGaugcuCGGcgUCUgCcggGCCACCGu -3'
miRNA:   3'- -UUACAGCUUC-----GCCuaAGA-G---UGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 25508 0.69 0.653457
Target:  5'- cGAUGgCGcGGCGGGUggcggcauaaUCgUCGCCGCCGa -3'
miRNA:   3'- -UUACaGCuUCGCCUA----------AG-AGUGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 5844 0.69 0.641914
Target:  5'- --aGggCGAAGCGGAg-CUCACCGCg- -3'
miRNA:   3'- uuaCa-GCUUCGCCUaaGAGUGGUGgc -5'
28046 3' -51.8 NC_005887.1 + 19874 0.69 0.630362
Target:  5'- --cGUCGAguGGCGGAgaagugUUUUUGCCACCc -3'
miRNA:   3'- uuaCAGCU--UCGCCU------AAGAGUGGUGGc -5'
28046 3' -51.8 NC_005887.1 + 16507 0.71 0.53889
Target:  5'- cGAUGUCGcAGGCcGAUcgCgUCGCCGCCGg -3'
miRNA:   3'- -UUACAGC-UUCGcCUAa-G-AGUGGUGGC- -5'
28046 3' -51.8 NC_005887.1 + 17698 1.06 0.002317
Target:  5'- cAAUGUCGAAGCGGAUUCUCACCACCGu -3'
miRNA:   3'- -UUACAGCUUCGCCUAAGAGUGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.