Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28046 | 5' | -59.1 | NC_005887.1 | + | 1489 | 0.68 | 0.314413 |
Target: 5'- cUUCGACgCGCGCG-GCGGCuucgcCGguGGAUc -3' miRNA: 3'- -AAGCUG-GUGCGCaCGCCG-----GCguUCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 30627 | 0.68 | 0.299049 |
Target: 5'- aUUCGugCGCGcCGUGCGcGCgGCGAa-- -3' miRNA: 3'- -AAGCugGUGC-GCACGC-CGgCGUUcua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 36515 | 0.68 | 0.277104 |
Target: 5'- gUCGACCGCaGCaucggGCGGCgGCAGGu- -3' miRNA: 3'- aAGCUGGUG-CGca---CGCCGgCGUUCua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 26423 | 0.69 | 0.27008 |
Target: 5'- -gCGGCCGCGCGggaacgcgcgcUGCaGCCGCGcgAGAUc -3' miRNA: 3'- aaGCUGGUGCGC-----------ACGcCGGCGU--UCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 41838 | 0.69 | 0.27008 |
Target: 5'- -aCGACCACGCGaucugGCGG-CGCcuGAUg -3' miRNA: 3'- aaGCUGGUGCGCa----CGCCgGCGuuCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 25155 | 0.69 | 0.255797 |
Target: 5'- -gCGGCgCAacauugcCGCGUGCGGCCGCGu--- -3' miRNA: 3'- aaGCUG-GU-------GCGCACGCCGGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 14362 | 0.69 | 0.250521 |
Target: 5'- -cCGACgACGCGauucggcccgagccgGCGGCgGCAAGAg -3' miRNA: 3'- aaGCUGgUGCGCa--------------CGCCGgCGUUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13698 | 0.69 | 0.249868 |
Target: 5'- cUCGACCACG-G-GCGGCCaGC-AGAUc -3' miRNA: 3'- aAGCUGGUGCgCaCGCCGG-CGuUCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 17394 | 0.7 | 0.230921 |
Target: 5'- -gCGGCCGCGCGcaagGCGGcCCGCGc--- -3' miRNA: 3'- aaGCUGGUGCGCa---CGCC-GGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 13306 | 0.7 | 0.218974 |
Target: 5'- aUCGGCCAgGCGUucggcaacGcCGGCCGCAucgcGGAUc -3' miRNA: 3'- aAGCUGGUgCGCA--------C-GCCGGCGU----UCUA- -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 5930 | 0.7 | 0.2132 |
Target: 5'- -cCGGCCGCGCGgaagGCGGUgCGCAAa-- -3' miRNA: 3'- aaGCUGGUGCGCa---CGCCG-GCGUUcua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 1782 | 0.71 | 0.185759 |
Target: 5'- cUCGACCuGCGCGU-CGGCCGCuacccgaAGGAc -3' miRNA: 3'- aAGCUGG-UGCGCAcGCCGGCG-------UUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 40608 | 0.74 | 0.103447 |
Target: 5'- cUCGACgaGCGUGUGUGGCCGCAc--- -3' miRNA: 3'- aAGCUGg-UGCGCACGCCGGCGUucua -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 24949 | 0.75 | 0.099377 |
Target: 5'- -gCGugCGCGCGggccgccuugcgcGCGGCCGCGAGGg -3' miRNA: 3'- aaGCugGUGCGCa------------CGCCGGCGUUCUa -5' |
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28046 | 5' | -59.1 | NC_005887.1 | + | 17735 | 1.03 | 0.00072 |
Target: 5'- gUUCGACCACGCGUGCGGCCGCAAGAUc -3' miRNA: 3'- -AAGCUGGUGCGCACGCCGGCGUUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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