miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28047 3' -64.2 NC_005887.1 + 13615 0.75 0.058086
Target:  5'- gCUG-GCaGCGCGGCGcgCGGCgGCCGCa -3'
miRNA:   3'- -GGCuCG-CGCGCCGUa-GCCGgCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 25002 0.76 0.049217
Target:  5'- gCCGAGCGUcaGCucGCGcCGGCgGCCGCCg -3'
miRNA:   3'- -GGCUCGCG--CGc-CGUaGCCGgCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 13396 0.76 0.045292
Target:  5'- gCCG-GCGCgGCGGaCGUCGGCggcaaGCCGCUg -3'
miRNA:   3'- -GGCuCGCG-CGCC-GUAGCCGg----CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 27035 0.77 0.041672
Target:  5'- gCGAGCGCGCGaCcgCGcacGCUGCCGCCc -3'
miRNA:   3'- gGCUCGCGCGCcGuaGC---CGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 17969 0.77 0.04053
Target:  5'- gCGGGCuCGcCGGCAUCGGCCGCa-CCg -3'
miRNA:   3'- gGCUCGcGC-GCCGUAGCCGGCGgcGG- -5'
28047 3' -64.2 NC_005887.1 + 23986 0.73 0.082687
Target:  5'- cUCGAGCGCgagGCGGCGcUCGGgaaucucCUGCCGCa -3'
miRNA:   3'- -GGCUCGCG---CGCCGU-AGCC-------GGCGGCGg -5'
28047 3' -64.2 NC_005887.1 + 15613 0.72 0.092408
Target:  5'- aCGGGCGuCGCGcaGCAggCGGCCGggcUCGCCg -3'
miRNA:   3'- gGCUCGC-GCGC--CGUa-GCCGGC---GGCGG- -5'
28047 3' -64.2 NC_005887.1 + 28290 0.71 0.114569
Target:  5'- gCCGAGCGCGCGcaGCGUCguGGCgacuUGuuGCUg -3'
miRNA:   3'- -GGCUCGCGCGC--CGUAG--CCG----GCggCGG- -5'
28047 3' -64.2 NC_005887.1 + 31505 0.71 0.114569
Target:  5'- gCCGcGCGCGCGGCG-CGGaugaaCGCaguugucgcuuCGCCa -3'
miRNA:   3'- -GGCuCGCGCGCCGUaGCCg----GCG-----------GCGG- -5'
28047 3' -64.2 NC_005887.1 + 27668 0.71 0.114569
Target:  5'- gCCGcGCGCGCGGCuugAUCGucugcaucacguGCCGUaccuCGCCg -3'
miRNA:   3'- -GGCuCGCGCGCCG---UAGC------------CGGCG----GCGG- -5'
28047 3' -64.2 NC_005887.1 + 28419 0.71 0.111847
Target:  5'- gCCGAGCGCGCGcaggcgcucgugcucGCgaagcugacccuucGUCGGCuUGuuGCCg -3'
miRNA:   3'- -GGCUCGCGCGC---------------CG--------------UAGCCG-GCggCGG- -5'
28047 3' -64.2 NC_005887.1 + 26838 0.71 0.108602
Target:  5'- gCGAGCGgGC-GCGUCuGCCgguagccguuGCCGCCg -3'
miRNA:   3'- gGCUCGCgCGcCGUAGcCGG----------CGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 35116 0.71 0.108602
Target:  5'- uUCGAGgGCGgGGCGcggaUCGGaauCCGgCGCCa -3'
miRNA:   3'- -GGCUCgCGCgCCGU----AGCC---GGCgGCGG- -5'
28047 3' -64.2 NC_005887.1 + 14521 0.72 0.10573
Target:  5'- uCCGcuuGCagGCGCGGcCGUCGGCgGCgCGUCg -3'
miRNA:   3'- -GGCu--CG--CGCGCC-GUAGCCGgCG-GCGG- -5'
28047 3' -64.2 NC_005887.1 + 4622 0.72 0.10573
Target:  5'- ---cGC-CGCGGCGcCGGUgGCCGCCg -3'
miRNA:   3'- ggcuCGcGCGCCGUaGCCGgCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 30526 0.72 0.102928
Target:  5'- ---cGCGUagGCGGcCGUCGGCCGagaCGCCa -3'
miRNA:   3'- ggcuCGCG--CGCC-GUAGCCGGCg--GCGG- -5'
28047 3' -64.2 NC_005887.1 + 40651 0.72 0.100197
Target:  5'- aCGAGCGCGCGccgauCAcCGGCCGCa-CCa -3'
miRNA:   3'- gGCUCGCGCGCc----GUaGCCGGCGgcGG- -5'
28047 3' -64.2 NC_005887.1 + 29886 0.72 0.099927
Target:  5'- gCCGAGCGUaCGGCGUuucuucaCGGCCcacucccacauGCCGCg -3'
miRNA:   3'- -GGCUCGCGcGCCGUA-------GCCGG-----------CGGCGg -5'
28047 3' -64.2 NC_005887.1 + 37090 0.72 0.097534
Target:  5'- aCCGaAGCGgGCgagcacagccucGGCGaucgcgCGGCCGUCGCCc -3'
miRNA:   3'- -GGC-UCGCgCG------------CCGUa-----GCCGGCGGCGG- -5'
28047 3' -64.2 NC_005887.1 + 15691 0.72 0.094938
Target:  5'- aCCGc-CGCGCGGC--CGGaugauuCCGCCGCCg -3'
miRNA:   3'- -GGCucGCGCGCCGuaGCC------GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.