miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28049 3' -52.9 NC_005887.1 + 19446 0.68 0.646668
Target:  5'- cUUCAUCUgcGCCUGAUagaugcgccaccaGCGCGCGa -3'
miRNA:   3'- aAAGUAGA--UGGGCUAguag---------CGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 41201 0.68 0.627174
Target:  5'- --gCAUCcgACCCGcgCGUCGuCGUGCc -3'
miRNA:   3'- aaaGUAGa-UGGGCuaGUAGC-GCGCGc -5'
28049 3' -52.9 NC_005887.1 + 33722 0.68 0.61571
Target:  5'- -gUCgAUCUGCUCGAUCGcggcgaggaUCaGCGCGCc -3'
miRNA:   3'- aaAG-UAGAUGGGCUAGU---------AG-CGCGCGc -5'
28049 3' -52.9 NC_005887.1 + 27618 0.68 0.604261
Target:  5'- -aUCG-CUuuCUCGAUCGUCGCcuGCGCGa -3'
miRNA:   3'- aaAGUaGAu-GGGCUAGUAGCG--CGCGC- -5'
28049 3' -52.9 NC_005887.1 + 10845 0.68 0.604261
Target:  5'- --gCGUUcAUCCGcgCcgCGCGCGCGg -3'
miRNA:   3'- aaaGUAGaUGGGCuaGuaGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 36148 0.68 0.604261
Target:  5'- -aUCGUCUcGCCgGuuuccUCGUCGCGgCGCGu -3'
miRNA:   3'- aaAGUAGA-UGGgCu----AGUAGCGC-GCGC- -5'
28049 3' -52.9 NC_005887.1 + 8197 0.69 0.592838
Target:  5'- gUUCGaugUCUACCCGcgCAcCGacaCGCGCGg -3'
miRNA:   3'- aAAGU---AGAUGGGCuaGUaGC---GCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 5145 0.69 0.581451
Target:  5'- --gCG-CUGCCCGA-CGUCGgCGCGCc -3'
miRNA:   3'- aaaGUaGAUGGGCUaGUAGC-GCGCGc -5'
28049 3' -52.9 NC_005887.1 + 26890 0.69 0.57011
Target:  5'- --gCGUCUugguGCgCGGUCAUCGCG-GCGa -3'
miRNA:   3'- aaaGUAGA----UGgGCUAGUAGCGCgCGC- -5'
28049 3' -52.9 NC_005887.1 + 35467 0.69 0.57011
Target:  5'- -aUCAUgUACuuGAUCAgCGCcuGCGCGu -3'
miRNA:   3'- aaAGUAgAUGggCUAGUaGCG--CGCGC- -5'
28049 3' -52.9 NC_005887.1 + 34554 0.69 0.544249
Target:  5'- cUUCGUCUGCgcguagaugUCGAUCGUCGCGUucacguagcagccgGCGu -3'
miRNA:   3'- aAAGUAGAUG---------GGCUAGUAGCGCG--------------CGC- -5'
28049 3' -52.9 NC_005887.1 + 27911 0.7 0.536452
Target:  5'- ---gGUCUGgUCGAUCgcgGUUGCGCGCGu -3'
miRNA:   3'- aaagUAGAUgGGCUAG---UAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 6915 0.7 0.525381
Target:  5'- -gUCAUCUacgcgucgcucgACCUGAUCGacUCGUGgGCGa -3'
miRNA:   3'- aaAGUAGA------------UGGGCUAGU--AGCGCgCGC- -5'
28049 3' -52.9 NC_005887.1 + 12416 0.71 0.450707
Target:  5'- --cCGUCgauCCCGAg-AUCGUGCGCGa -3'
miRNA:   3'- aaaGUAGau-GGGCUagUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 25574 0.71 0.450707
Target:  5'- ----uUCUGCCCGAccuUCAUCGCGUcgaucGCGc -3'
miRNA:   3'- aaaguAGAUGGGCU---AGUAGCGCG-----CGC- -5'
28049 3' -52.9 NC_005887.1 + 39778 0.72 0.40109
Target:  5'- -gUCGcggcgCUcGCgCCGAUCGUUGCGCGCGu -3'
miRNA:   3'- aaAGUa----GA-UG-GGCUAGUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 38201 0.72 0.382239
Target:  5'- -cUCAa-UACCCGAgccaGUCGCGCGCa -3'
miRNA:   3'- aaAGUagAUGGGCUag--UAGCGCGCGc -5'
28049 3' -52.9 NC_005887.1 + 38869 0.77 0.215397
Target:  5'- --aCGUCgUGCUCGAUCAUCaGCGCGCc -3'
miRNA:   3'- aaaGUAG-AUGGGCUAGUAG-CGCGCGc -5'
28049 3' -52.9 NC_005887.1 + 4264 0.79 0.162725
Target:  5'- ---aGUCUgaacugcucgGCCCGAUgAUCGCGCGCGa -3'
miRNA:   3'- aaagUAGA----------UGGGCUAgUAGCGCGCGC- -5'
28049 3' -52.9 NC_005887.1 + 16169 1.07 0.001552
Target:  5'- uUUUCAUCUACCCGAUCAUCGCGCGCGa -3'
miRNA:   3'- -AAAGUAGAUGGGCUAGUAGCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.