miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28049 5' -59.1 NC_005887.1 + 2415 0.69 0.325017
Target:  5'- cGCGAuGcGCGUCGUCGAcGCGCC-CGGc -3'
miRNA:   3'- cUGCU-CcUGCAGCAGCU-CGCGGcGCU- -5'
28049 5' -59.1 NC_005887.1 + 38060 0.69 0.325017
Target:  5'- cGGCGAGGAUGUCGacCucGCG-CGCGAu -3'
miRNA:   3'- -CUGCUCCUGCAGCa-GcuCGCgGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 32289 0.69 0.294968
Target:  5'- cACG-GGGCGaUCGUCGGgccagccggcGCGCCGCa- -3'
miRNA:   3'- cUGCuCCUGC-AGCAGCU----------CGCGGCGcu -5'
28049 5' -59.1 NC_005887.1 + 16310 0.7 0.287802
Target:  5'- cACGcAGGACGcCGgccuguUCGAGguCGCCGCGAa -3'
miRNA:   3'- cUGC-UCCUGCaGC------AGCUC--GCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 2554 0.71 0.22299
Target:  5'- uGCGaAGuGACGacgcgcgcaacgaUCGgcgCGAGCGCCGCGAc -3'
miRNA:   3'- cUGC-UC-CUGC-------------AGCa--GCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 15985 0.72 0.206823
Target:  5'- -uCGAGGAUGUCGUgCGcGCgcagacccGCCGCGAg -3'
miRNA:   3'- cuGCUCCUGCAGCA-GCuCG--------CGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 27586 0.72 0.206823
Target:  5'- cGGCGAGGugGUCGUaacccGCGuuGCGc -3'
miRNA:   3'- -CUGCUCCugCAGCAgcu--CGCggCGCu -5'
28049 5' -59.1 NC_005887.1 + 17275 0.74 0.15444
Target:  5'- gGGCGA-GACGUCGggCG-GCGCCGCGc -3'
miRNA:   3'- -CUGCUcCUGCAGCa-GCuCGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 2893 0.74 0.142395
Target:  5'- cGACGAcGGACa-CGUCGGcCGCCGCGAa -3'
miRNA:   3'- -CUGCU-CCUGcaGCAGCUcGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 27588 0.75 0.12085
Target:  5'- cGCGAGcGCGcCGUCGAGCGUCGUGu -3'
miRNA:   3'- cUGCUCcUGCaGCAGCUCGCGGCGCu -5'
28049 5' -59.1 NC_005887.1 + 13762 0.75 0.117568
Target:  5'- cGCGAGGACGauuUCca-GAGCGCCGUGAa -3'
miRNA:   3'- cUGCUCCUGC---AGcagCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 39399 0.76 0.111251
Target:  5'- cGGCGAGGAUgGUCG-CGgcGGUGCCGCGGc -3'
miRNA:   3'- -CUGCUCCUG-CAGCaGC--UCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 29946 0.78 0.079573
Target:  5'- -uCGGGaucGACGgUGUCGAGCGCCGCGAa -3'
miRNA:   3'- cuGCUC---CUGCaGCAGCUCGCGGCGCU- -5'
28049 5' -59.1 NC_005887.1 + 16203 1.09 0.000385
Target:  5'- cGACGAGGACGUCGUCGAGCGCCGCGAa -3'
miRNA:   3'- -CUGCUCCUGCAGCAGCUCGCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.