Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 15977 | 1.13 | 0.000623 |
Target: 5'- uCCGCGACUGGAACGCUGGCAAGAUCCc -3' miRNA: 3'- -GGCGCUGACCUUGCGACCGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 11387 | 0.75 | 0.255086 |
Target: 5'- gCGCaGCcGGAGCGCUGGCGgccGGcgCCg -3' miRNA: 3'- gGCGcUGaCCUUGCGACCGU---UCuaGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26426 | 0.75 | 0.275092 |
Target: 5'- gCCGCG-CgGGAacgcGCGCUGcagccgcGCGAGAUCCg -3' miRNA: 3'- -GGCGCuGaCCU----UGCGAC-------CGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 16450 | 0.74 | 0.297846 |
Target: 5'- aCCGCGuGCgcgcGGGcauGCGCUcgaccgcgcGGCAGGAUCCg -3' miRNA: 3'- -GGCGC-UGa---CCU---UGCGA---------CCGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 12191 | 0.73 | 0.354499 |
Target: 5'- uCCGCGACUucGACGCcGGCAucGGcgCCg -3' miRNA: 3'- -GGCGCUGAccUUGCGaCCGU--UCuaGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 6816 | 0.72 | 0.381003 |
Target: 5'- gCGCGACUGGcgcuACG-UGGCGcGGGUCUg -3' miRNA: 3'- gGCGCUGACCu---UGCgACCGU-UCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 29308 | 0.71 | 0.437825 |
Target: 5'- aCGCGGC---GACGCUGGCcguguGGAUCUg -3' miRNA: 3'- gGCGCUGaccUUGCGACCGu----UCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 37524 | 0.71 | 0.467997 |
Target: 5'- aCgGuCGACUGGuugGCGCggcagaacUGcGCGAGAUCCg -3' miRNA: 3'- -GgC-GCUGACCu--UGCG--------AC-CGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 279 | 0.7 | 0.520513 |
Target: 5'- aCGUGGCgcgGGAACuGCgUGGCGuGAUCa -3' miRNA: 3'- gGCGCUGa--CCUUG-CG-ACCGUuCUAGg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 8580 | 0.7 | 0.531301 |
Target: 5'- aCCGCaGCaGGuuucguucGACGCUGGCGAGcUCUc -3' miRNA: 3'- -GGCGcUGaCC--------UUGCGACCGUUCuAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 27864 | 0.69 | 0.564116 |
Target: 5'- aCCGCGGCgGGcACGauCUGcGCGAGGcCCg -3' miRNA: 3'- -GGCGCUGaCCuUGC--GAC-CGUUCUaGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26333 | 0.69 | 0.575178 |
Target: 5'- gCCGUGGCcGG--CGCUGGCcGGGUgCg -3' miRNA: 3'- -GGCGCUGaCCuuGCGACCGuUCUAgG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 11335 | 0.69 | 0.542169 |
Target: 5'- aCCGCGACggccGGuACGCUGaGCAcacuGAgCCu -3' miRNA: 3'- -GGCGCUGa---CCuUGCGAC-CGUu---CUaGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 12143 | 0.68 | 0.63104 |
Target: 5'- gCCGCGACgcGGcGugGCUGGCcggcGAGAa-- -3' miRNA: 3'- -GGCGCUGa-CC-UugCGACCG----UUCUagg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 29976 | 0.68 | 0.619826 |
Target: 5'- aCCGCcGC-GcGGAUGCUGuCGAGGUCCa -3' miRNA: 3'- -GGCGcUGaC-CUUGCGACcGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 16833 | 0.68 | 0.597441 |
Target: 5'- cCCGCGA-UGGAGCGCgacaucauccGCGAGGUguaCCg -3' miRNA: 3'- -GGCGCUgACCUUGCGac--------CGUUCUA---GG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 15391 | 0.68 | 0.653461 |
Target: 5'- gCCGCG-CUGaucGCGCgcgGGCAgcGGAUCg -3' miRNA: 3'- -GGCGCuGACcu-UGCGa--CCGU--UCUAGg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 16404 | 0.67 | 0.697967 |
Target: 5'- gCCGcCGGCcGGAagcucACGCaGGCcGAGAUCg -3' miRNA: 3'- -GGC-GCUGaCCU-----UGCGaCCG-UUCUAGg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 10762 | 0.67 | 0.6758 |
Target: 5'- gCGCGGCgGGuACGaggGGCAgucguGGAUCUg -3' miRNA: 3'- gGCGCUGaCCuUGCga-CCGU-----UCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 8475 | 0.67 | 0.6758 |
Target: 5'- aCgGCGAC-GGAGCGCUGucggcugccGCAGGcUCg -3' miRNA: 3'- -GgCGCUGaCCUUGCGAC---------CGUUCuAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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