Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 9239 | 0.65 | 0.771802 |
Target: 5'- aCgGCGA--GGAACGCaagccgGGCGaccccgacuaccuGGAUCCg -3' miRNA: 3'- -GgCGCUgaCCUUGCGa-----CCGU-------------UCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 26836 | 0.67 | 0.6758 |
Target: 5'- cUCGCGACguccGGAAa-CUGGCcGGcGUCCa -3' miRNA: 3'- -GGCGCUGa---CCUUgcGACCGuUC-UAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 8475 | 0.67 | 0.6758 |
Target: 5'- aCgGCGAC-GGAGCGCUGucggcugccGCAGGcUCg -3' miRNA: 3'- -GgCGCUGaCCUUGCGAC---------CGUUCuAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 12191 | 0.73 | 0.354499 |
Target: 5'- uCCGCGACUucGACGCcGGCAucGGcgCCg -3' miRNA: 3'- -GGCGCUGAccUUGCGaCCGU--UCuaGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 12143 | 0.68 | 0.63104 |
Target: 5'- gCCGCGACgcGGcGugGCUGGCcggcGAGAa-- -3' miRNA: 3'- -GGCGCUGa-CC-UugCGACCG----UUCUagg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 16743 | 0.67 | 0.708957 |
Target: 5'- gUGCGA---GAGCGCUGGCGAaGUCa -3' miRNA: 3'- gGCGCUgacCUUGCGACCGUUcUAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 27864 | 0.69 | 0.564116 |
Target: 5'- aCCGCGGCgGGcACGauCUGcGCGAGGcCCg -3' miRNA: 3'- -GGCGCUGaCCuUGC--GAC-CGUUCUaGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 37524 | 0.71 | 0.467997 |
Target: 5'- aCgGuCGACUGGuugGCGCggcagaacUGcGCGAGAUCCg -3' miRNA: 3'- -GgC-GCUGACCu--UGCG--------AC-CGUUCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 29308 | 0.71 | 0.437825 |
Target: 5'- aCGCGGC---GACGCUGGCcguguGGAUCUg -3' miRNA: 3'- gGCGCUGaccUUGCGACCGu----UCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 9083 | 0.66 | 0.719869 |
Target: 5'- gCUGCGGC-GGGACGaaguuucGCGAGAUCa -3' miRNA: 3'- -GGCGCUGaCCUUGCgac----CGUUCUAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 15977 | 1.13 | 0.000623 |
Target: 5'- uCCGCGACUGGAACGCUGGCAAGAUCCc -3' miRNA: 3'- -GGCGCUGACCUUGCGACCGUUCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 18914 | 0.66 | 0.762491 |
Target: 5'- -aGCGGCgGGAugGCgGGCGGcugcgacgagcuGAUCg -3' miRNA: 3'- ggCGCUGaCCUugCGaCCGUU------------CUAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 16404 | 0.67 | 0.697967 |
Target: 5'- gCCGcCGGCcGGAagcucACGCaGGCcGAGAUCg -3' miRNA: 3'- -GGC-GCUGaCCU-----UGCGaCCG-UUCUAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 10762 | 0.67 | 0.6758 |
Target: 5'- gCGCGGCgGGuACGaggGGCAgucguGGAUCUg -3' miRNA: 3'- gGCGCUGaCCuUGCga-CCGU-----UCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 41491 | 0.67 | 0.672457 |
Target: 5'- cCCGCauggcaccGGCUcGAACggcaagucgacgguGCUcGGCAAGAUCCg -3' miRNA: 3'- -GGCG--------CUGAcCUUG--------------CGA-CCGUUCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 26213 | 0.67 | 0.664646 |
Target: 5'- gCgGUGGCcGGccuGCaGCUGGCGcacGGGUCCg -3' miRNA: 3'- -GgCGCUGaCCu--UG-CGACCGU---UCUAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 15391 | 0.68 | 0.653461 |
Target: 5'- gCCGCG-CUGaucGCGCgcgGGCAgcGGAUCg -3' miRNA: 3'- -GGCGCuGACcu-UGCGa--CCGU--UCUAGg -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 11335 | 0.69 | 0.542169 |
Target: 5'- aCCGCGACggccGGuACGCUGaGCAcacuGAgCCu -3' miRNA: 3'- -GGCGCUGa---CCuUGCGAC-CGUu---CUaGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 8580 | 0.7 | 0.531301 |
Target: 5'- aCCGCaGCaGGuuucguucGACGCUGGCGAGcUCUc -3' miRNA: 3'- -GGCGcUGaCC--------UUGCGACCGUUCuAGG- -5' |
|||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 16450 | 0.74 | 0.297846 |
Target: 5'- aCCGCGuGCgcgcGGGcauGCGCUcgaccgcgcGGCAGGAUCCg -3' miRNA: 3'- -GGCGC-UGa---CCU---UGCGA---------CCGUUCUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home