Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28050 | 3' | -53.8 | NC_005887.1 | + | 16743 | 0.67 | 0.708957 |
Target: 5'- gUGCGA---GAGCGCUGGCGAaGUCa -3' miRNA: 3'- gGCGCUgacCUUGCGACCGUUcUAGg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 16833 | 0.68 | 0.597441 |
Target: 5'- cCCGCGA-UGGAGCGCgacaucauccGCGAGGUguaCCg -3' miRNA: 3'- -GGCGCUgACCUUGCGac--------CGUUCUA---GG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 18914 | 0.66 | 0.762491 |
Target: 5'- -aGCGGCgGGAugGCgGGCGGcugcgacgagcuGAUCg -3' miRNA: 3'- ggCGCUGaCCUugCGaCCGUU------------CUAGg -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 22604 | 0.67 | 0.697967 |
Target: 5'- gUGCGugUGGAuCGCUGcGCGcGucgCCu -3' miRNA: 3'- gGCGCugACCUuGCGAC-CGUuCua-GG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26213 | 0.67 | 0.664646 |
Target: 5'- gCgGUGGCcGGccuGCaGCUGGCGcacGGGUCCg -3' miRNA: 3'- -GgCGCUGaCCu--UG-CGACCGU---UCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26333 | 0.69 | 0.575178 |
Target: 5'- gCCGUGGCcGG--CGCUGGCcGGGUgCg -3' miRNA: 3'- -GGCGCUGaCCuuGCGACCGuUCUAgG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26426 | 0.75 | 0.275092 |
Target: 5'- gCCGCG-CgGGAacgcGCGCUGcagccgcGCGAGAUCCg -3' miRNA: 3'- -GGCGCuGaCCU----UGCGAC-------CGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 26836 | 0.67 | 0.6758 |
Target: 5'- cUCGCGACguccGGAAa-CUGGCcGGcGUCCa -3' miRNA: 3'- -GGCGCUGa---CCUUgcGACCGuUC-UAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 27864 | 0.69 | 0.564116 |
Target: 5'- aCCGCGGCgGGcACGauCUGcGCGAGGcCCg -3' miRNA: 3'- -GGCGCUGaCCuUGC--GAC-CGUUCUaGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 29308 | 0.71 | 0.437825 |
Target: 5'- aCGCGGC---GACGCUGGCcguguGGAUCUg -3' miRNA: 3'- gGCGCUGaccUUGCGACCGu----UCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 29976 | 0.68 | 0.619826 |
Target: 5'- aCCGCcGC-GcGGAUGCUGuCGAGGUCCa -3' miRNA: 3'- -GGCGcUGaC-CUUGCGACcGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 37524 | 0.71 | 0.467997 |
Target: 5'- aCgGuCGACUGGuugGCGCggcagaacUGcGCGAGAUCCg -3' miRNA: 3'- -GgC-GCUGACCu--UGCG--------AC-CGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 41491 | 0.67 | 0.672457 |
Target: 5'- cCCGCauggcaccGGCUcGAACggcaagucgacgguGCUcGGCAAGAUCCg -3' miRNA: 3'- -GGCG--------CUGAcCUUG--------------CGA-CCGUUCUAGG- -5' |
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28050 | 3' | -53.8 | NC_005887.1 | + | 42064 | 0.66 | 0.761448 |
Target: 5'- cUCGcCGACUGGAucgacgaGCGCUgucgcguggGGCGcGAUgCCg -3' miRNA: 3'- -GGC-GCUGACCU-------UGCGA---------CCGUuCUA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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