miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28052 3' -56.4 NC_005887.1 + 4898 0.66 0.570572
Target:  5'- gUCGCCGAGGgc-CG-GCGCG-AGGUg -3'
miRNA:   3'- gAGCGGCUCCaacGCgUGUGCuUCCA- -5'
28052 3' -56.4 NC_005887.1 + 23500 0.66 0.569472
Target:  5'- gCUUGCCGAcguguucGGccGCGCugACGAacgcgcGGGUg -3'
miRNA:   3'- -GAGCGGCU-------CCaaCGCGugUGCU------UCCA- -5'
28052 3' -56.4 NC_005887.1 + 6307 0.66 0.558508
Target:  5'- -gCGUCGAGGccUUGCGCcucgccgGCGCcGAGGUg -3'
miRNA:   3'- gaGCGGCUCC--AACGCG-------UGUGcUUCCA- -5'
28052 3' -56.4 NC_005887.1 + 28339 0.67 0.536768
Target:  5'- -gCGCCGGcGGUUGCggagGCGCGCGGcgcauucuucgucGGGa -3'
miRNA:   3'- gaGCGGCU-CCAACG----CGUGUGCU-------------UCCa -5'
28052 3' -56.4 NC_005887.1 + 18202 0.67 0.52708
Target:  5'- uUCGCCGugcugaacccGGaucUGCGCACGAAGGUg -3'
miRNA:   3'- gAGCGGCu---------CCaacGCGUGUGCUUCCA- -5'
28052 3' -56.4 NC_005887.1 + 34842 0.67 0.52708
Target:  5'- -aCGCuCGGGGUcGUGC-CGcCGAGGGUg -3'
miRNA:   3'- gaGCG-GCUCCAaCGCGuGU-GCUUCCA- -5'
28052 3' -56.4 NC_005887.1 + 26164 0.67 0.505794
Target:  5'- cCUCGUCGAucgUGuCGCGCGCGAugaucGGGUa -3'
miRNA:   3'- -GAGCGGCUccaAC-GCGUGUGCU-----UCCA- -5'
28052 3' -56.4 NC_005887.1 + 18394 0.67 0.505794
Target:  5'- --gGCCGAGGUcgucggugcgUGCGCAgACGGccgcgAGGc -3'
miRNA:   3'- gagCGGCUCCA----------ACGCGUgUGCU-----UCCa -5'
28052 3' -56.4 NC_005887.1 + 15981 0.67 0.49529
Target:  5'- uUCGUCGAGGaugucgUGCGCGCgcagacccgccGCGAGccGGUg -3'
miRNA:   3'- gAGCGGCUCCa-----ACGCGUG-----------UGCUU--CCA- -5'
28052 3' -56.4 NC_005887.1 + 11542 0.68 0.444373
Target:  5'- aCUgGCCGAGGccgcggUGCGCgccauugaucgcGCGCaGAAGGa -3'
miRNA:   3'- -GAgCGGCUCCa-----ACGCG------------UGUG-CUUCCa -5'
28052 3' -56.4 NC_005887.1 + 8708 0.71 0.303661
Target:  5'- cCUCGCCGAGcGcaGCGCGCGCuacGGGa -3'
miRNA:   3'- -GAGCGGCUC-CaaCGCGUGUGcu-UCCa -5'
28052 3' -56.4 NC_005887.1 + 40160 0.73 0.234575
Target:  5'- gCUCGCCGcGuGUgagcUGCGCgacgGCACGAAGGg -3'
miRNA:   3'- -GAGCGGCuC-CA----ACGCG----UGUGCUUCCa -5'
28052 3' -56.4 NC_005887.1 + 15334 1.08 0.000684
Target:  5'- gCUCGCCGAGGUUGCGCACACGAAGGUg -3'
miRNA:   3'- -GAGCGGCUCCAACGCGUGUGCUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.