Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28052 | 5' | -58.3 | NC_005887.1 | + | 37333 | 0.68 | 0.363656 |
Target: 5'- aGcGCCggCACUGGCAU-CgGUCGCCGc -3' miRNA: 3'- aCuUGGa-GUGGCCGUGuGgCAGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 20049 | 0.68 | 0.363656 |
Target: 5'- cUGAACCacaaagUCACCcGCACAUCGg-GCCGu -3' miRNA: 3'- -ACUUGG------AGUGGcCGUGUGGCagCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 41281 | 0.68 | 0.355181 |
Target: 5'- -cGACCUgcgCACgGGCGCGCUGcugcCGCCGg -3' miRNA: 3'- acUUGGA---GUGgCCGUGUGGCa---GCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 31302 | 0.68 | 0.355181 |
Target: 5'- -cGACCggCAUCGGCGCACCgGUgGUCa -3' miRNA: 3'- acUUGGa-GUGGCCGUGUGG-CAgCGGc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 529 | 0.68 | 0.355181 |
Target: 5'- cUGAACgCgUCgGCCGccGCGCGCCG-CGCCGg -3' miRNA: 3'- -ACUUG-G-AG-UGGC--CGUGUGGCaGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 12209 | 0.69 | 0.346846 |
Target: 5'- aGcGCCgCGCCgGGCGCGCCGgauuucaCGCCa -3' miRNA: 3'- aCuUGGaGUGG-CCGUGUGGCa------GCGGc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 10899 | 0.69 | 0.346846 |
Target: 5'- gUGcACCUgcaGCCGGCGCAgaugaCGUCgGCCGg -3' miRNA: 3'- -ACuUGGAg--UGGCCGUGUg----GCAG-CGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 32303 | 0.69 | 0.338652 |
Target: 5'- cGGGCCa-GCCGGCGCGCCGcagUGCg- -3' miRNA: 3'- aCUUGGagUGGCCGUGUGGCa--GCGgc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 37777 | 0.67 | 0.455765 |
Target: 5'- cUGcGCCUCGgCGGCuuGCUG-CGCCu -3' miRNA: 3'- -ACuUGGAGUgGCCGugUGGCaGCGGc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 8966 | 0.67 | 0.445987 |
Target: 5'- aUGAGCCUCAuCCuGCcCGCCGgCGCg- -3' miRNA: 3'- -ACUUGGAGU-GGcCGuGUGGCaGCGgc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 25951 | 0.67 | 0.445987 |
Target: 5'- gUGAGCUUCcgGCCGGCG-GCCGUC-UCGa -3' miRNA: 3'- -ACUUGGAG--UGGCCGUgUGGCAGcGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 12068 | 0.67 | 0.436327 |
Target: 5'- cGAACgUCguGCgCGGCACgAUCGUcgCGCCGg -3' miRNA: 3'- aCUUGgAG--UG-GCCGUG-UGGCA--GCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 8578 | 0.67 | 0.436327 |
Target: 5'- gUGGAag-C-CCGGCACGCCG-CGCCn -3' miRNA: 3'- -ACUUggaGuGGCCGUGUGGCaGCGGc -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 5365 | 0.66 | 0.475661 |
Target: 5'- -cGugCUCGCCGGCGagcucgaccCGCgCGaCGCCGa -3' miRNA: 3'- acUugGAGUGGCCGU---------GUG-GCaGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 19561 | 0.66 | 0.475661 |
Target: 5'- gUGAACaaCAgCGGcCGCGCCGgCGUCGa -3' miRNA: 3'- -ACUUGgaGUgGCC-GUGUGGCaGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 40497 | 0.66 | 0.485769 |
Target: 5'- aGAACCaguggUCcgaguCCGGCGCGuucgUGUCGCCGa -3' miRNA: 3'- aCUUGG-----AGu----GGCCGUGUg---GCAGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 30792 | 0.66 | 0.485769 |
Target: 5'- cGAuuCCgcgacCGCCGcGCGCugCG-CGCCGa -3' miRNA: 3'- aCUu-GGa----GUGGC-CGUGugGCaGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 6464 | 0.66 | 0.495979 |
Target: 5'- -cGACCUgaagUACgGGCGCGgCGUCGCgGu -3' miRNA: 3'- acUUGGA----GUGgCCGUGUgGCAGCGgC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 5956 | 0.66 | 0.506285 |
Target: 5'- aUGAACCagacCACCauCGCgGCCGUCGUCGa -3' miRNA: 3'- -ACUUGGa---GUGGccGUG-UGGCAGCGGC- -5' |
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28052 | 5' | -58.3 | NC_005887.1 | + | 15371 | 1.09 | 0.000396 |
Target: 5'- gUGAACCUCACCGGCACACCGUCGCCGa -3' miRNA: 3'- -ACUUGGAGUGGCCGUGUGGCAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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