miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 3' -54 NC_005887.1 + 26401 0.79 0.134395
Target:  5'- aGCGGCGUGCGgcGCGUGGCCGGcGCAUc- -3'
miRNA:   3'- -UGCCGUACGU--CGCACUGGCU-UGUAcc -5'
28054 3' -54 NC_005887.1 + 26901 0.7 0.478255
Target:  5'- cGCGGuCAUcGCGGCGacgucguccgguUGACCGAACAc-- -3'
miRNA:   3'- -UGCC-GUA-CGUCGC------------ACUGGCUUGUacc -5'
28054 3' -54 NC_005887.1 + 28038 0.7 0.457624
Target:  5'- cACuGCGU-CGGCGUGAUCGAGCA-GGc -3'
miRNA:   3'- -UGcCGUAcGUCGCACUGGCUUGUaCC- -5'
28054 3' -54 NC_005887.1 + 29021 0.68 0.609644
Target:  5'- cGCGGCGagauccgcgaUGCggccGGCGUuGCCGAACGccUGGc -3'
miRNA:   3'- -UGCCGU----------ACG----UCGCAcUGGCUUGU--ACC- -5'
28054 3' -54 NC_005887.1 + 30338 0.71 0.398772
Target:  5'- aGCGGCGUGCGuGCGccggaUGuCUGcAACGUGGg -3'
miRNA:   3'- -UGCCGUACGU-CGC-----ACuGGC-UUGUACC- -5'
28054 3' -54 NC_005887.1 + 31912 0.7 0.467881
Target:  5'- -aGGCAUGCugcuGCaaGAuCCGGGCGUGGu -3'
miRNA:   3'- ugCCGUACGu---CGcaCU-GGCUUGUACC- -5'
28054 3' -54 NC_005887.1 + 32421 0.66 0.721717
Target:  5'- gUGGCcgGCGGCGaugUGGCCGGcgGCGa-- -3'
miRNA:   3'- uGCCGuaCGUCGC---ACUGGCU--UGUacc -5'
28054 3' -54 NC_005887.1 + 34938 0.69 0.553678
Target:  5'- -aGGCG-GCGGCGgGugCGAcCGUGGc -3'
miRNA:   3'- ugCCGUaCGUCGCaCugGCUuGUACC- -5'
28054 3' -54 NC_005887.1 + 34984 0.69 0.531691
Target:  5'- cGCGGCGuugucgucggucUGCAGCGcGAUCGAAUAc-- -3'
miRNA:   3'- -UGCCGU------------ACGUCGCaCUGGCUUGUacc -5'
28054 3' -54 NC_005887.1 + 38032 0.68 0.609644
Target:  5'- uGCGGCAUguccgGCAGC-UGGCCGGccucgGCGaGGa -3'
miRNA:   3'- -UGCCGUA-----CGUCGcACUGGCU-----UGUaCC- -5'
28054 3' -54 NC_005887.1 + 38180 0.7 0.457624
Target:  5'- gGCGGUGUGCAGCaUGGCCGGcuCAa-- -3'
miRNA:   3'- -UGCCGUACGUCGcACUGGCUu-GUacc -5'
28054 3' -54 NC_005887.1 + 38219 0.68 0.575928
Target:  5'- cGCGcGCAgccuUGC-GCGUGGCCGGG-AUGGu -3'
miRNA:   3'- -UGC-CGU----ACGuCGCACUGGCUUgUACC- -5'
28054 3' -54 NC_005887.1 + 38642 0.67 0.620937
Target:  5'- cGCGGUcgGC-GCGcGGCuCGAcgGCGUGGu -3'
miRNA:   3'- -UGCCGuaCGuCGCaCUG-GCU--UGUACC- -5'
28054 3' -54 NC_005887.1 + 39279 0.67 0.673976
Target:  5'- uCGGCGuucagcgccUGCAggaucuucGCGUcgucguucgucauuGGCCGAGCAUGGc -3'
miRNA:   3'- uGCCGU---------ACGU--------CGCA--------------CUGGCUUGUACC- -5'
28054 3' -54 NC_005887.1 + 42027 0.67 0.677343
Target:  5'- cGCGGCGcGCGauGCGUacaaGgCGGACAUGGa -3'
miRNA:   3'- -UGCCGUaCGU--CGCAc---UgGCUUGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.