miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 5' -58.3 NC_005887.1 + 23408 0.66 0.451133
Target:  5'- aGCCUGCagcagcgcgUCGAUCA-GCuCGuCGCAGc -3'
miRNA:   3'- gCGGACG---------AGCUAGUgCG-GCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 38629 0.67 0.441357
Target:  5'- aGCUUGCgcgGAUCGCgGUCGGCGCGc- -3'
miRNA:   3'- gCGGACGag-CUAGUG-CGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 35390 0.67 0.431701
Target:  5'- aGCUcaUGCUCGAU-GCGCCcGCGCAc- -3'
miRNA:   3'- gCGG--ACGAGCUAgUGCGGcUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 26985 0.67 0.431701
Target:  5'- uCGaCCUGCUCGGgcgUCACGUgGaACGUGGc -3'
miRNA:   3'- -GC-GGACGAGCU---AGUGCGgC-UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 36957 0.67 0.431701
Target:  5'- cCGCCgGUUcacCGGUCGCGCUGGCuucgccuucgaGCAGUc -3'
miRNA:   3'- -GCGGaCGA---GCUAGUGCGGCUG-----------CGUCA- -5'
28054 5' -58.3 NC_005887.1 + 33723 0.67 0.430742
Target:  5'- uCGaUCUGCUCGAUCGCGgCGaggaucaGCGCGc- -3'
miRNA:   3'- -GC-GGACGAGCUAGUGCgGC-------UGCGUca -5'
28054 5' -58.3 NC_005887.1 + 14559 0.67 0.421224
Target:  5'- uCGCCUGCgUCGGcgccgucgUCAuggcgcucuaccuCGCCGGCGCGc- -3'
miRNA:   3'- -GCGGACG-AGCU--------AGU-------------GCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 8596 0.67 0.403494
Target:  5'- gCGCCagaUGCUCGugaAgGCCGGCGCGc- -3'
miRNA:   3'- -GCGG---ACGAGCuagUgCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 26212 0.67 0.394354
Target:  5'- gCGCCggugguugGCggggUGGUUGCGCgCGGCGCAGc -3'
miRNA:   3'- -GCGGa-------CGa---GCUAGUGCG-GCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 30414 0.67 0.394354
Target:  5'- aCGCCgaGUUCGcccaccAUCAgGCCGACGuCGGg -3'
miRNA:   3'- -GCGGa-CGAGC------UAGUgCGGCUGC-GUCa -5'
28054 5' -58.3 NC_005887.1 + 14963 0.67 0.394354
Target:  5'- gCGCCgcaCUCGAcgccUACGCCG-CGCAGg -3'
miRNA:   3'- -GCGGac-GAGCUa---GUGCGGCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 37699 0.68 0.371228
Target:  5'- gGUCUGCgcgucgcugagauccUUGAUCGCGCCGGCGg--- -3'
miRNA:   3'- gCGGACG---------------AGCUAGUGCGGCUGCguca -5'
28054 5' -58.3 NC_005887.1 + 32742 0.68 0.367753
Target:  5'- gCGCggcGCUCGcgugCGCGCCGGCGCGc- -3'
miRNA:   3'- -GCGga-CGAGCua--GUGCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 27757 0.68 0.359164
Target:  5'- gGCCgaUGC-CGAgCGCGCCGGCGaGGUa -3'
miRNA:   3'- gCGG--ACGaGCUaGUGCGGCUGCgUCA- -5'
28054 5' -58.3 NC_005887.1 + 9592 0.68 0.350716
Target:  5'- cCGgCUGCaUgGcgCGCGCCGGCGCGc- -3'
miRNA:   3'- -GCgGACG-AgCuaGUGCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 26877 0.68 0.350716
Target:  5'- gGCCaGCUCGAaCGCGUCuugguGCGCGGUc -3'
miRNA:   3'- gCGGaCGAGCUaGUGCGGc----UGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 16253 0.68 0.350716
Target:  5'- -uCCUGCUCGAcgccaugaaACGCCG-CGCGGg -3'
miRNA:   3'- gcGGACGAGCUag-------UGCGGCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 15633 0.68 0.350716
Target:  5'- gGCCggGCUcgcCGAUCaggGCGCCGuguCGCAGa -3'
miRNA:   3'- gCGGa-CGA---GCUAG---UGCGGCu--GCGUCa -5'
28054 5' -58.3 NC_005887.1 + 14622 0.68 0.350716
Target:  5'- gCGCCgucgaggGCgCGcUCACggcaGCCGGCGCGGUg -3'
miRNA:   3'- -GCGGa------CGaGCuAGUG----CGGCUGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 11123 0.68 0.34241
Target:  5'- gGCaUGUUCGAUCGCGUCGugcugaagcACGCGGc -3'
miRNA:   3'- gCGgACGAGCUAGUGCGGC---------UGCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.