miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 3' -54.5 NC_005887.1 + 14122 1.08 0.000791
Target:  5'- cGAAGCUGCGCGCGCUGCUCAAAACCGc -3'
miRNA:   3'- -CUUCGACGCGCGCGACGAGUUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 4143 0.81 0.07805
Target:  5'- aAGGCUGCGCGCGaCUgGCUCGgguauuGAGCCGg -3'
miRNA:   3'- cUUCGACGCGCGC-GA-CGAGU------UUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 6081 0.76 0.17148
Target:  5'- cGAAGaUGCGCGCGCUGC--GAAGCUGu -3'
miRNA:   3'- -CUUCgACGCGCGCGACGagUUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 34263 0.75 0.186576
Target:  5'- cGAGCUGCGCGCGC-GCUUucgugaacGACCa -3'
miRNA:   3'- cUUCGACGCGCGCGaCGAGuu------UUGGc -5'
28055 3' -54.5 NC_005887.1 + 9561 0.74 0.226402
Target:  5'- uGAAGCgGCGCGCGCcgauccUGCgCAcGAGCCGg -3'
miRNA:   3'- -CUUCGaCGCGCGCG------ACGaGU-UUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 30811 0.73 0.259087
Target:  5'- --cGCUGCGCGCcgaGCUGCugaUCAGcuuGACCGc -3'
miRNA:   3'- cuuCGACGCGCG---CGACG---AGUU---UUGGC- -5'
28055 3' -54.5 NC_005887.1 + 17908 0.73 0.259087
Target:  5'- uGAuGCUGCGUGUcCUGCUCGcGACCu -3'
miRNA:   3'- -CUuCGACGCGCGcGACGAGUuUUGGc -5'
28055 3' -54.5 NC_005887.1 + 14065 0.73 0.273203
Target:  5'- cGAcGCUGCGCGCGCUcgGCgu---GCCGa -3'
miRNA:   3'- -CUuCGACGCGCGCGA--CGaguuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 13982 0.73 0.280489
Target:  5'- cGAAGCcGuCGaCGCGUucgUGCUCGAAGCCa -3'
miRNA:   3'- -CUUCGaC-GC-GCGCG---ACGAGUUUUGGc -5'
28055 3' -54.5 NC_005887.1 + 11748 0.73 0.287929
Target:  5'- --cGCUGCGCGaGUUGCUCGcGAuCCGg -3'
miRNA:   3'- cuuCGACGCGCgCGACGAGUuUU-GGC- -5'
28055 3' -54.5 NC_005887.1 + 14691 0.72 0.302491
Target:  5'- cAAGCcGCGCGCGCggcaGCUCAGcgcgcacAACUGg -3'
miRNA:   3'- cUUCGaCGCGCGCGa---CGAGUU-------UUGGC- -5'
28055 3' -54.5 NC_005887.1 + 27662 0.72 0.319237
Target:  5'- uGAGCUGcCGCGCGCgcgGCUU--GAUCGu -3'
miRNA:   3'- cUUCGAC-GCGCGCGa--CGAGuuUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 15728 0.71 0.335824
Target:  5'- aGGAGCUGaCGCGCcaGCUGC--AGGACCa -3'
miRNA:   3'- -CUUCGAC-GCGCG--CGACGagUUUUGGc -5'
28055 3' -54.5 NC_005887.1 + 8093 0.71 0.344351
Target:  5'- aAAGC-GCGCGCGCaGCUC---GCCGc -3'
miRNA:   3'- cUUCGaCGCGCGCGaCGAGuuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 12661 0.71 0.370854
Target:  5'- -uGGCUGCGCGUgcaGCUGC-CAAGcaagcGCCa -3'
miRNA:   3'- cuUCGACGCGCG---CGACGaGUUU-----UGGc -5'
28055 3' -54.5 NC_005887.1 + 2256 0.71 0.379993
Target:  5'- cGAGCaUGgGCGCGCguaaGUUCGGGAUCGa -3'
miRNA:   3'- cUUCG-ACgCGCGCGa---CGAGUUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 17226 0.71 0.379993
Target:  5'- -cAGCUGCG-GCGCUGgaUCucGGCCGg -3'
miRNA:   3'- cuUCGACGCgCGCGACg-AGuuUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 11647 0.7 0.398716
Target:  5'- cAAGCUGCuCGCGCaccUGCUC---GCCGa -3'
miRNA:   3'- cUUCGACGcGCGCG---ACGAGuuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 8714 0.7 0.407332
Target:  5'- cGAGCgcaGCGCGCGCUacgggaaGUUCgAAGACCa -3'
miRNA:   3'- cUUCGa--CGCGCGCGA-------CGAG-UUUUGGc -5'
28055 3' -54.5 NC_005887.1 + 18397 0.7 0.41802
Target:  5'- cGAGGUcgucggUGCGUGCGCagacgGCcgCGAGGCCGa -3'
miRNA:   3'- -CUUCG------ACGCGCGCGa----CGa-GUUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.