miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 3' -54.5 NC_005887.1 + 13935 0.66 0.616768
Target:  5'- cGAGCgccUGCGCGCGCUcgGCUgCGAcgugcgcgugacgacAGCCGn -3'
miRNA:   3'- cUUCG---ACGCGCGCGA--CGA-GUU---------------UUGGC- -5'
28055 3' -54.5 NC_005887.1 + 15548 0.67 0.60079
Target:  5'- cGGGCgacgacucgGCGCGCGCgaccgcGCUCGAuucGCUGa -3'
miRNA:   3'- cUUCGa--------CGCGCGCGa-----CGAGUUu--UGGC- -5'
28055 3' -54.5 NC_005887.1 + 29884 0.67 0.593958
Target:  5'- cGAGCUGagaaGCGCGCgucgaaccguacagGCUCGGGuCCa -3'
miRNA:   3'- cUUCGACg---CGCGCGa-------------CGAGUUUuGGc -5'
28055 3' -54.5 NC_005887.1 + 39100 0.67 0.589409
Target:  5'- cGAAGUUGCGCaGCGCgagcgGCgCGgucGAAUCGa -3'
miRNA:   3'- -CUUCGACGCG-CGCGa----CGaGU---UUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 41695 0.67 0.589409
Target:  5'- cGAGCUGCGCGaGggGCUCAucAAGgCGa -3'
miRNA:   3'- cUUCGACGCGCgCgaCGAGU--UUUgGC- -5'
28055 3' -54.5 NC_005887.1 + 15004 0.67 0.578068
Target:  5'- --cGuCUGCGCGcCGCUGCgcguggcgcagUCGAcguGGCCGg -3'
miRNA:   3'- cuuC-GACGCGC-GCGACG-----------AGUU---UUGGC- -5'
28055 3' -54.5 NC_005887.1 + 16232 0.67 0.578068
Target:  5'- cGAAGC-GCGcCGUGCaggacauccUGCUCGAcGCCa -3'
miRNA:   3'- -CUUCGaCGC-GCGCG---------ACGAGUUuUGGc -5'
28055 3' -54.5 NC_005887.1 + 37931 0.67 0.578068
Target:  5'- -cAGCagGCGCGCGUUGUUgAAucAGCCc -3'
miRNA:   3'- cuUCGa-CGCGCGCGACGAgUU--UUGGc -5'
28055 3' -54.5 NC_005887.1 + 38150 0.67 0.578068
Target:  5'- ---cCUGCGCGCGCUGCagCAcu-UCGg -3'
miRNA:   3'- cuucGACGCGCGCGACGa-GUuuuGGC- -5'
28055 3' -54.5 NC_005887.1 + 28417 0.67 0.578068
Target:  5'- -cAGCcgaGCGCGCGCaggcgcucgUGCUCGcgAAGCUGa -3'
miRNA:   3'- cuUCGa--CGCGCGCG---------ACGAGU--UUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 28232 0.67 0.566776
Target:  5'- uGAGCaGCGCGCGCaGCUuCGcGAgCGg -3'
miRNA:   3'- cUUCGaCGCGCGCGaCGA-GUuUUgGC- -5'
28055 3' -54.5 NC_005887.1 + 24120 0.67 0.566776
Target:  5'- --uGCUGCGCGUGUcgUGCggugUGAAgcGCCGg -3'
miRNA:   3'- cuuCGACGCGCGCG--ACGa---GUUU--UGGC- -5'
28055 3' -54.5 NC_005887.1 + 31036 0.67 0.55554
Target:  5'- -cGGUUGCG-GCGCUcGCUgCcGAGCCGg -3'
miRNA:   3'- cuUCGACGCgCGCGA-CGA-GuUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 1007 0.67 0.55554
Target:  5'- --cGCcgUGCGCGCGCUguacaccgGCUUGAAGCgGa -3'
miRNA:   3'- cuuCG--ACGCGCGCGA--------CGAGUUUUGgC- -5'
28055 3' -54.5 NC_005887.1 + 26460 0.68 0.54437
Target:  5'- -cAGCUGCGCGUcgagcgcaccgaGCUGCUgGugcGCCu -3'
miRNA:   3'- cuUCGACGCGCG------------CGACGAgUuu-UGGc -5'
28055 3' -54.5 NC_005887.1 + 14646 0.68 0.54437
Target:  5'- -cAGCcgGCGCgGUGCUGCcCGucGCCGg -3'
miRNA:   3'- cuUCGa-CGCG-CGCGACGaGUuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 7122 0.68 0.54437
Target:  5'- cGAGGCgggGCG-GCGCUGCggc--GCCGu -3'
miRNA:   3'- -CUUCGa--CGCgCGCGACGaguuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 18931 0.68 0.543258
Target:  5'- -cGGCUGCGacgagcugaucgaCGCGCUGCUgCGGcuGCCa -3'
miRNA:   3'- cuUCGACGC-------------GCGCGACGA-GUUu-UGGc -5'
28055 3' -54.5 NC_005887.1 + 29978 0.68 0.522261
Target:  5'- ---uUUGCGCgGUGCUGCUCGGccuGCCa -3'
miRNA:   3'- cuucGACGCG-CGCGACGAGUUu--UGGc -5'
28055 3' -54.5 NC_005887.1 + 4202 0.68 0.515694
Target:  5'- cGAAGUgcugcaGCGCGCGCaggagaaaggcgugcUGCUCGc-GCCGa -3'
miRNA:   3'- -CUUCGa-----CGCGCGCG---------------ACGAGUuuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.