miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 22202 0.68 0.242755
Target:  5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3'
miRNA:   3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 39342 0.68 0.219152
Target:  5'- cCGCGGCGCUGGccGCaGGCGCguugACGGaCg -3'
miRNA:   3'- -GCGCCGCGACUa-CG-CCGCG----UGUCgGg -5'
28055 5' -61.9 NC_005887.1 + 42026 0.68 0.224286
Target:  5'- cCGCGGCGCgcGAUGCguacaaGGCGgACAuggaccuGCUCg -3'
miRNA:   3'- -GCGCCGCGa-CUACG------CCGCgUGU-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 16119 0.68 0.236663
Target:  5'- gGUGGCGCUGc-GCcGCGCGCAaccacCCCg -3'
miRNA:   3'- gCGCCGCGACuaCGcCGCGUGUc----GGG- -5'
28055 5' -61.9 NC_005887.1 + 24603 0.68 0.213566
Target:  5'- uCGCGGCGaUGAucuUGCGGCcGCACgcguGGUCg -3'
miRNA:   3'- -GCGCCGCgACU---ACGCCG-CGUG----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 26224 0.68 0.219152
Target:  5'- gGCGGgGUgguUGCGcGCgGCGCAGCgCCa -3'
miRNA:   3'- gCGCCgCGacuACGC-CG-CGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 29020 0.68 0.213566
Target:  5'- gCGCGGCGagauccgcGAUGCGGCcgGCGuuGCCg -3'
miRNA:   3'- -GCGCCGCga------CUACGCCG--CGUguCGGg -5'
28055 5' -61.9 NC_005887.1 + 1029 0.68 0.213566
Target:  5'- -cCGGCGUcacgaccgUGAUGCGGUGUuccuuGCCCg -3'
miRNA:   3'- gcGCCGCG--------ACUACGCCGCGugu--CGGG- -5'
28055 5' -61.9 NC_005887.1 + 2472 0.68 0.236663
Target:  5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3'
miRNA:   3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33837 0.68 0.236663
Target:  5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3'
miRNA:   3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4624 0.68 0.236663
Target:  5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3'
miRNA:   3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5'
28055 5' -61.9 NC_005887.1 + 16493 0.68 0.248978
Target:  5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3'
miRNA:   3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5'
28055 5' -61.9 NC_005887.1 + 37028 0.68 0.242755
Target:  5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3'
miRNA:   3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 19056 0.68 0.248978
Target:  5'- uGCGGCGUUGuucuuCGGCGCgggcuGCGGCaaCCg -3'
miRNA:   3'- gCGCCGCGACuac--GCCGCG-----UGUCG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.