miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 41114 0.69 0.20276
Target:  5'- uCGC-GUGCUGA-GCGcCGCGCAGCgCCc -3'
miRNA:   3'- -GCGcCGCGACUaCGCcGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 27971 0.69 0.197537
Target:  5'- gCGCGcGCGCcGA-GCGGCGacucgaACAgguGCCCg -3'
miRNA:   3'- -GCGC-CGCGaCUaCGCCGCg-----UGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 12628 0.69 0.197537
Target:  5'- gCGCGGCGCgUGAuccUGCGaCGCgACGGCg- -3'
miRNA:   3'- -GCGCCGCG-ACU---ACGCcGCG-UGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 33943 0.69 0.207563
Target:  5'- cCGaCGGCGCUcGGcgagcacgucgcgUGCGGCGUccguCAGCaCCg -3'
miRNA:   3'- -GC-GCCGCGA-CU-------------ACGCCGCGu---GUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 35785 0.69 0.20276
Target:  5'- -uCGGCGCUcaacGAguuguagcGCGGCG-ACAGCCCc -3'
miRNA:   3'- gcGCCGCGA----CUa-------CGCCGCgUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 9564 0.69 0.208102
Target:  5'- aGCGGCGCgcgccGAUcCuGCGCACgAGCCg -3'
miRNA:   3'- gCGCCGCGa----CUAcGcCGCGUG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 34595 0.69 0.197537
Target:  5'- aGcCGGCGUaGAUGCGGCcuuccuugcccGC-CAGCCa -3'
miRNA:   3'- gC-GCCGCGaCUACGCCG-----------CGuGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 11134 0.69 0.19446
Target:  5'- uCGCGucGUGCUGAagcacGCGGCGCccgaaaucuacgcgcGCAuGCCCg -3'
miRNA:   3'- -GCGC--CGCGACUa----CGCCGCG---------------UGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 28258 0.69 0.187442
Target:  5'- gGCGGU-CUGGU-CGGCGUACAGCg- -3'
miRNA:   3'- gCGCCGcGACUAcGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 41918 0.69 0.20276
Target:  5'- cCGCacGUGCUGA-GCGGCuCGCAGCUg -3'
miRNA:   3'- -GCGc-CGCGACUaCGCCGcGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 37446 0.69 0.20276
Target:  5'- gCGCGGCGCUugccugcGCGGUuuGCAguGCgCCg -3'
miRNA:   3'- -GCGCCGCGAcua----CGCCG--CGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 37397 0.69 0.20276
Target:  5'- aGCuGGCGCUGc-GCGGuCGCgACuGCCUg -3'
miRNA:   3'- gCG-CCGCGACuaCGCC-GCG-UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30943 0.69 0.199612
Target:  5'- gCGCucGGCGgUGAUGuCGGCGCccGCGuacgugaggaacuucGCCCa -3'
miRNA:   3'- -GCG--CCGCgACUAC-GCCGCG--UGU---------------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 24947 0.69 0.197537
Target:  5'- aCGCGuGCGCgcggGccGCcuuGCGCGCGGCCg -3'
miRNA:   3'- -GCGC-CGCGa---CuaCGc--CGCGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 24880 0.69 0.197537
Target:  5'- gGCGGCgGCcGAUGCcGCGCGCucGGUCUu -3'
miRNA:   3'- gCGCCG-CGaCUACGcCGCGUG--UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13085 0.69 0.192432
Target:  5'- aCGCGGCGCUcGAUcGCGGagugcuGCAgGGCgugCCg -3'
miRNA:   3'- -GCGCCGCGA-CUA-CGCCg-----CGUgUCG---GG- -5'
28055 5' -61.9 NC_005887.1 + 30460 0.69 0.192432
Target:  5'- uGCcGgGCUGGaacagGCGGUGCgcgacGCGGCCCg -3'
miRNA:   3'- gCGcCgCGACUa----CGCCGCG-----UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 36920 0.69 0.182086
Target:  5'- aGCgGGCGCgUGGucgcgccggucgcUGCGGCGC-C-GCCCg -3'
miRNA:   3'- gCG-CCGCG-ACU-------------ACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 18672 0.69 0.185968
Target:  5'- gCGCGcagucucgucgaacGUGCagGAUGCGGCGCAgGGCa- -3'
miRNA:   3'- -GCGC--------------CGCGa-CUACGCCGCGUgUCGgg -5'
28055 5' -61.9 NC_005887.1 + 34711 0.7 0.177805
Target:  5'- uCGUcGCGCU--UGCGGUGCGCGGCg- -3'
miRNA:   3'- -GCGcCGCGAcuACGCCGCGUGUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.