miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 34711 0.7 0.177805
Target:  5'- uCGUcGCGCU--UGCGGUGCGCGGCg- -3'
miRNA:   3'- -GCGcCGCGAcuACGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 14505 0.7 0.173153
Target:  5'- cCGCGGUGCUug-GUGGUccgcuugcagGCGCGGCCg -3'
miRNA:   3'- -GCGCCGCGAcuaCGCCG----------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 42187 0.7 0.173153
Target:  5'- uCGCGcGCGCUGGcucgucgcauUGCuGCGCGCGGUUUu -3'
miRNA:   3'- -GCGC-CGCGACU----------ACGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28804 0.7 0.172694
Target:  5'- gGCGGCaGCgcaucgccGAUcgcauucgcgaucGUGGCGCGCAuGCCCg -3'
miRNA:   3'- gCGCCG-CGa-------CUA-------------CGCCGCGUGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 6046 0.7 0.155616
Target:  5'- gGUGGUGCUGGUggcaGCGGCGCgGCA-CUCa -3'
miRNA:   3'- gCGCCGCGACUA----CGCCGCG-UGUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 2539 0.7 0.172694
Target:  5'- gCGCaaGGCGCUGucggGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- -GCG--CCGCGACua--CGCCG-------------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 8067 0.7 0.173153
Target:  5'- uGCGuGCGCacgucUGGUcguucacgaaaGCGcGCGCGCAGCUCg -3'
miRNA:   3'- gCGC-CGCG-----ACUA-----------CGC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28898 0.7 0.161563
Target:  5'- gCGCGcccgucaggaugaacGUGCUGA-GCGGUGCGCcGCUCg -3'
miRNA:   3'- -GCGC---------------CGCGACUaCGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 27357 0.7 0.16861
Target:  5'- gGCGGCaCgccUGCGGCcuGCGCGGCCUn -3'
miRNA:   3'- gCGCCGcGacuACGCCG--CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 32427 0.71 0.15149
Target:  5'- gGCGGCGaugUGGccgGCGGCgaucagguuGCGCAGCCa -3'
miRNA:   3'- gCGCCGCg--ACUa--CGCCG---------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 11004 0.71 0.147464
Target:  5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3'
miRNA:   3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 1698 0.71 0.147464
Target:  5'- uGCGGcCGgUGAU-CGGCGCGC-GCUCg -3'
miRNA:   3'- gCGCC-GCgACUAcGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 10030 0.71 0.147464
Target:  5'- -uCGGCGUgUGGuccuacgcacUGCGGCGCGCcggcuGGCCCg -3'
miRNA:   3'- gcGCCGCG-ACU----------ACGCCGCGUG-----UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 26209 0.71 0.143535
Target:  5'- gGCGGCGgUGGccggccUGCagcuGGCGCACGGgUCCg -3'
miRNA:   3'- gCGCCGCgACU------ACG----CCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 26675 0.71 0.131958
Target:  5'- gCGCGGCGgUGAgcUGgucgagcuCGGCGCGCAucugcgacacggcGCCCu -3'
miRNA:   3'- -GCGCCGCgACU--AC--------GCCGCGUGU-------------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 25046 0.71 0.132318
Target:  5'- aCGCGGUGCgccGAaccgGCGuuugcGCGCGCGGCgCCg -3'
miRNA:   3'- -GCGCCGCGa--CUa---CGC-----CGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 7017 0.71 0.143535
Target:  5'- uCGUGGCcgGCcGccGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCG--CGaCuaCGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 41796 0.71 0.143535
Target:  5'- gGCGgucuucGCGCUGuauccggcGCGGCGCGCGGCggCCg -3'
miRNA:   3'- gCGC------CGCGACua------CGCCGCGUGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 27653 0.72 0.115404
Target:  5'- uGUGcGCGCUGAgcUGcCGcGCGCGCGGCUUg -3'
miRNA:   3'- gCGC-CGCGACU--AC-GC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1231 0.72 0.112273
Target:  5'- gGCgGGCGCUGc-GCGGCGCuCAGCa- -3'
miRNA:   3'- gCG-CCGCGACuaCGCCGCGuGUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.