Results 121 - 132 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 26408 | 0.75 | 0.067745 |
Target: 5'- uGCGGCGCgug-GcCGGCGCAucgauucCGGCCCg -3' miRNA: 3'- gCGCCGCGacuaC-GCCGCGU-------GUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 11529 | 0.75 | 0.071878 |
Target: 5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3' miRNA: 3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 21815 | 0.75 | 0.071878 |
Target: 5'- cCGCGGCGCUGccG-GGCGCGCcgaaugaaacGGCCa -3' miRNA: 3'- -GCGCCGCGACuaCgCCGCGUG----------UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 13622 | 0.77 | 0.051162 |
Target: 5'- gCGCGGCGC-GcgGCGGcCGCACucAGCCg -3' miRNA: 3'- -GCGCCGCGaCuaCGCC-GCGUG--UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 27491 | 0.77 | 0.054158 |
Target: 5'- gGUGcGCGCUGuugcUGCGGUGUGCAcGCCCg -3' miRNA: 3'- gCGC-CGCGACu---ACGCCGCGUGU-CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 41947 | 0.77 | 0.046968 |
Target: 5'- gCGCGGCGCgucuucGCGGCGCuu-GCCCg -3' miRNA: 3'- -GCGCCGCGacua--CGCCGCGuguCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 39411 | 0.78 | 0.041894 |
Target: 5'- uCGCGGCGgUGccGCGGCGCuugcGCAGCUUg -3' miRNA: 3'- -GCGCCGCgACuaCGCCGCG----UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 2204 | 0.78 | 0.038444 |
Target: 5'- aCGCGGCGagc--GCGGCGCGCAGCgCg -3' miRNA: 3'- -GCGCCGCgacuaCGCCGCGUGUCGgG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 10431 | 0.78 | 0.040711 |
Target: 5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3' miRNA: 3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 41597 | 0.8 | 0.027223 |
Target: 5'- aGCGGCgGCccaGGUGCGGCggccgGCGCGGCCCg -3' miRNA: 3'- gCGCCG-CGa--CUACGCCG-----CGUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 902 | 0.8 | 0.027223 |
Target: 5'- gCGCGGCGUgccGA-GCaGCGCAUAGCCCa -3' miRNA: 3'- -GCGCCGCGa--CUaCGcCGCGUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 14156 | 1.11 | 0.000104 |
Target: 5'- gCGCGGCGCUGAUGCGGCGCACAGCCCg -3' miRNA: 3'- -GCGCCGCGACUACGCCGCGUGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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