Results 61 - 80 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 34595 | 0.69 | 0.197537 |
Target: 5'- aGcCGGCGUaGAUGCGGCcuuccuugcccGC-CAGCCa -3' miRNA: 3'- gC-GCCGCGaCUACGCCG-----------CGuGUCGGg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 41114 | 0.69 | 0.20276 |
Target: 5'- uCGC-GUGCUGA-GCGcCGCGCAGCgCCc -3' miRNA: 3'- -GCGcCGCGACUaCGCcGCGUGUCG-GG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 33943 | 0.69 | 0.207563 |
Target: 5'- cCGaCGGCGCUcGGcgagcacgucgcgUGCGGCGUccguCAGCaCCg -3' miRNA: 3'- -GC-GCCGCGA-CU-------------ACGCCGCGu---GUCG-GG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 41918 | 0.69 | 0.20276 |
Target: 5'- cCGCacGUGCUGA-GCGGCuCGCAGCUg -3' miRNA: 3'- -GCGc-CGCGACUaCGCCGcGUGUCGGg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 37446 | 0.69 | 0.20276 |
Target: 5'- gCGCGGCGCUugccugcGCGGUuuGCAguGCgCCg -3' miRNA: 3'- -GCGCCGCGAcua----CGCCG--CGUguCG-GG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 37397 | 0.69 | 0.20276 |
Target: 5'- aGCuGGCGCUGc-GCGGuCGCgACuGCCUg -3' miRNA: 3'- gCG-CCGCGACuaCGCC-GCG-UGuCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 30943 | 0.69 | 0.199612 |
Target: 5'- gCGCucGGCGgUGAUGuCGGCGCccGCGuacgugaggaacuucGCCCa -3' miRNA: 3'- -GCG--CCGCgACUAC-GCCGCG--UGU---------------CGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 24947 | 0.69 | 0.197537 |
Target: 5'- aCGCGuGCGCgcggGccGCcuuGCGCGCGGCCg -3' miRNA: 3'- -GCGC-CGCGa---CuaCGc--CGCGUGUCGGg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 24880 | 0.69 | 0.197537 |
Target: 5'- gGCGGCgGCcGAUGCcGCGCGCucGGUCUu -3' miRNA: 3'- gCGCCG-CGaCUACGcCGCGUG--UCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 30460 | 0.69 | 0.192432 |
Target: 5'- uGCcGgGCUGGaacagGCGGUGCgcgacGCGGCCCg -3' miRNA: 3'- gCGcCgCGACUa----CGCCGCG-----UGUCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 18672 | 0.69 | 0.185968 |
Target: 5'- gCGCGcagucucgucgaacGUGCagGAUGCGGCGCAgGGCa- -3' miRNA: 3'- -GCGC--------------CGCGa-CUACGCCGCGUgUCGgg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 28258 | 0.69 | 0.187442 |
Target: 5'- gGCGGU-CUGGU-CGGCGUACAGCg- -3' miRNA: 3'- gCGCCGcGACUAcGCCGCGUGUCGgg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 33837 | 0.68 | 0.236663 |
Target: 5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3' miRNA: 3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 4624 | 0.68 | 0.236663 |
Target: 5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3' miRNA: 3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 1029 | 0.68 | 0.213566 |
Target: 5'- -cCGGCGUcacgaccgUGAUGCGGUGUuccuuGCCCg -3' miRNA: 3'- gcGCCGCG--------ACUACGCCGCGugu--CGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 22202 | 0.68 | 0.242755 |
Target: 5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3' miRNA: 3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 16493 | 0.68 | 0.248978 |
Target: 5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3' miRNA: 3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 37028 | 0.68 | 0.242755 |
Target: 5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3' miRNA: 3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 42026 | 0.68 | 0.224286 |
Target: 5'- cCGCGGCGCgcGAUGCguacaaGGCGgACAuggaccuGCUCg -3' miRNA: 3'- -GCGCCGCGa-CUACG------CCGCgUGU-------CGGG- -5' |
|||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 2472 | 0.68 | 0.236663 |
Target: 5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3' miRNA: 3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home