miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 29020 0.68 0.213566
Target:  5'- gCGCGGCGagauccgcGAUGCGGCcgGCGuuGCCg -3'
miRNA:   3'- -GCGCCGCga------CUACGCCG--CGUguCGGg -5'
28055 5' -61.9 NC_005887.1 + 39342 0.68 0.219152
Target:  5'- cCGCGGCGCUGGccGCaGGCGCguugACGGaCg -3'
miRNA:   3'- -GCGCCGCGACUa-CG-CCGCG----UGUCgGg -5'
28055 5' -61.9 NC_005887.1 + 2472 0.68 0.236663
Target:  5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3'
miRNA:   3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 16493 0.68 0.248978
Target:  5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3'
miRNA:   3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5'
28055 5' -61.9 NC_005887.1 + 37028 0.68 0.242755
Target:  5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3'
miRNA:   3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 22202 0.68 0.242755
Target:  5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3'
miRNA:   3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4624 0.68 0.236663
Target:  5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3'
miRNA:   3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5'
28055 5' -61.9 NC_005887.1 + 33837 0.68 0.236663
Target:  5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3'
miRNA:   3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 15821 0.67 0.289104
Target:  5'- aCGaGGCGCaGGUGCaGCGCuugcGCGGCgCg -3'
miRNA:   3'- -GCgCCGCGaCUACGcCGCG----UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 14543 0.67 0.289104
Target:  5'- gGCGGCGCgucgaucgGcAUGUcGCGCGCGGaagaCCu -3'
miRNA:   3'- gCGCCGCGa-------C-UACGcCGCGUGUCg---GG- -5'
28055 5' -61.9 NC_005887.1 + 7130 0.67 0.289104
Target:  5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3'
miRNA:   3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29661 0.67 0.288395
Target:  5'- gCGCGGCGCgaGGUagcacaGCuGGCGCuugcuugGCAGCUg -3'
miRNA:   3'- -GCGCCGCGa-CUA------CG-CCGCG-------UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 8977 0.67 0.277243
Target:  5'- gGCGGCacccuacgcagaaGCUGcUGCGcacaaGCGCgacgacguuuucucuGCAGCCCg -3'
miRNA:   3'- gCGCCG-------------CGACuACGC-----CGCG---------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33162 0.67 0.27519
Target:  5'- cCGCGGCGgUGcuucgugcauucGUaGCGGcCGgACgAGCCCg -3'
miRNA:   3'- -GCGCCGCgAC------------UA-CGCC-GCgUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 22795 0.67 0.259857
Target:  5'- gCGCGGcCGCUGuuguucacgagcuacGCGGCGCAUccgaacguGCUCa -3'
miRNA:   3'- -GCGCC-GCGACua-------------CGCCGCGUGu-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 23245 0.67 0.255331
Target:  5'- aGCGGCgGC-GGU-CGGCGCgcaaaaggcGCAGCUCg -3'
miRNA:   3'- gCGCCG-CGaCUAcGCCGCG---------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 6319 0.67 0.255331
Target:  5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3'
miRNA:   3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 40497 0.67 0.253411
Target:  5'- gCGUGGCGCgacgucguGUucggcauccaccacGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCGCGac------UA--------------CGCCGCGUGUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.