miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 6319 0.67 0.255331
Target:  5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3'
miRNA:   3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 6040 0.67 0.27519
Target:  5'- gCGCGGCGUcGAccGCcGCGCAgauCGGCCa -3'
miRNA:   3'- -GCGCCGCGaCUa-CGcCGCGU---GUCGGg -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 24723 0.67 0.268436
Target:  5'- -aCGGCGCUGAccGUcGUGCGCAGCg- -3'
miRNA:   3'- gcGCCGCGACUa-CGcCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37746 0.66 0.318574
Target:  5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3'
miRNA:   3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30956 0.66 0.299169
Target:  5'- gGCGGCGCcGGccgccagcgcuccgGCuGCGCugAcGCCCg -3'
miRNA:   3'- gCGCCGCGaCUa-------------CGcCGCGugU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 29878 0.66 0.311001
Target:  5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3'
miRNA:   3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 14826 0.66 0.318574
Target:  5'- cCGCGaCGCUGAUgGCGG-GCAC-GUUCg -3'
miRNA:   3'- -GCGCcGCGACUA-CGCCgCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 34968 0.66 0.326286
Target:  5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3'
miRNA:   3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 1417 0.66 0.296266
Target:  5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3'
miRNA:   3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29617 0.66 0.311001
Target:  5'- gCGCGGCGC-GAU-CGaGCGCAUucuGCUg -3'
miRNA:   3'- -GCGCCGCGaCUAcGC-CGCGUGu--CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.