Results 121 - 132 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 37746 | 0.66 | 0.318574 |
Target: 5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3' miRNA: 3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 34968 | 0.66 | 0.326286 |
Target: 5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3' miRNA: 3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 795 | 0.66 | 0.326286 |
Target: 5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3' miRNA: 3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 30306 | 0.66 | 0.329409 |
Target: 5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3' miRNA: 3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 23935 | 0.66 | 0.334135 |
Target: 5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3' miRNA: 3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 32524 | 0.66 | 0.334135 |
Target: 5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3' miRNA: 3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 29168 | 0.66 | 0.294103 |
Target: 5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3' miRNA: 3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 23946 | 0.66 | 0.334135 |
Target: 5'- uCGCGGCGUc--UGCGcaCGCACcgacgaccucGGCCCa -3' miRNA: 3'- -GCGCCGCGacuACGCc-GCGUG----------UCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4755 | 0.66 | 0.326286 |
Target: 5'- gGCGGUGCUuuUGCGacgaGCGCGggaagcugacgcCAGCCg -3' miRNA: 3'- gCGCCGCGAcuACGC----CGCGU------------GUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 40015 | 0.66 | 0.318574 |
Target: 5'- uCGCGGUGCgcaucaUGgcGCGGCucgaggcgGC-CGGCCUa -3' miRNA: 3'- -GCGCCGCG------ACuaCGCCG--------CGuGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 37077 | 0.66 | 0.318574 |
Target: 5'- uGaCGGCGUUcgcaccGAaGCGGgcgaGCACAGCCUc -3' miRNA: 3'- gC-GCCGCGA------CUaCGCCg---CGUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 1417 | 0.66 | 0.296266 |
Target: 5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3' miRNA: 3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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