miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 2472 0.68 0.236663
Target:  5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3'
miRNA:   3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33837 0.68 0.236663
Target:  5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3'
miRNA:   3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4624 0.68 0.236663
Target:  5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3'
miRNA:   3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 22202 0.68 0.242755
Target:  5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3'
miRNA:   3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37028 0.68 0.242755
Target:  5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3'
miRNA:   3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 19056 0.68 0.248978
Target:  5'- uGCGGCGUUGuucuuCGGCGCgggcuGCGGCaaCCg -3'
miRNA:   3'- gCGCCGCGACuac--GCCGCG-----UGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 16493 0.68 0.248978
Target:  5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3'
miRNA:   3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5'
28055 5' -61.9 NC_005887.1 + 40497 0.67 0.253411
Target:  5'- gCGUGGCGCgacgucguGUucggcauccaccacGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCGCGac------UA--------------CGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 41729 0.67 0.255331
Target:  5'- gGCGGCGauccGAUccCGGCGCGCGGgCUCu -3'
miRNA:   3'- gCGCCGCga--CUAc-GCCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 23245 0.67 0.255331
Target:  5'- aGCGGCgGC-GGU-CGGCGCgcaaaaggcGCAGCUCg -3'
miRNA:   3'- gCGCCG-CGaCUAcGCCGCG---------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 6319 0.67 0.255331
Target:  5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3'
miRNA:   3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 22795 0.67 0.259857
Target:  5'- gCGCGGcCGCUGuuguucacgagcuacGCGGCGCAUccgaacguGCUCa -3'
miRNA:   3'- -GCGCC-GCGACua-------------CGCCGCGUGu-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.