miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 6040 0.67 0.27519
Target:  5'- gCGCGGCGUcGAccGCcGCGCAgauCGGCCa -3'
miRNA:   3'- -GCGCCGCGaCUa-CGcCGCGU---GUCGGg -5'
28055 5' -61.9 NC_005887.1 + 33162 0.67 0.27519
Target:  5'- cCGCGGCGgUGcuucgugcauucGUaGCGGcCGgACgAGCCCg -3'
miRNA:   3'- -GCGCCGCgAC------------UA-CGCC-GCgUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 8977 0.67 0.277243
Target:  5'- gGCGGCacccuacgcagaaGCUGcUGCGcacaaGCGCgacgacguuuucucuGCAGCCCg -3'
miRNA:   3'- gCGCCG-------------CGACuACGC-----CGCG---------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29661 0.67 0.288395
Target:  5'- gCGCGGCGCgaGGUagcacaGCuGGCGCuugcuugGCAGCUg -3'
miRNA:   3'- -GCGCCGCGa-CUA------CG-CCGCG-------UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 14543 0.67 0.289104
Target:  5'- gGCGGCGCgucgaucgGcAUGUcGCGCGCGGaagaCCu -3'
miRNA:   3'- gCGCCGCGa-------C-UACGcCGCGUGUCg---GG- -5'
28055 5' -61.9 NC_005887.1 + 15821 0.67 0.289104
Target:  5'- aCGaGGCGCaGGUGCaGCGCuugcGCGGCgCg -3'
miRNA:   3'- -GCgCCGCGaCUACGcCGCG----UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 7130 0.67 0.289104
Target:  5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3'
miRNA:   3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 1417 0.66 0.296266
Target:  5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3'
miRNA:   3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30956 0.66 0.299169
Target:  5'- gGCGGCGCcGGccgccagcgcuccgGCuGCGCugAcGCCCg -3'
miRNA:   3'- gCGCCGCGaCUa-------------CGcCGCGugU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 28547 0.66 0.303564
Target:  5'- gCGCcgGGCuGCUGAauuUGUaGGCGuCGCcGCCCg -3'
miRNA:   3'- -GCG--CCG-CGACU---ACG-CCGC-GUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 29878 0.66 0.311001
Target:  5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3'
miRNA:   3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29617 0.66 0.311001
Target:  5'- gCGCGGCGC-GAU-CGaGCGCAUucuGCUg -3'
miRNA:   3'- -GCGCCGCGaCUAcGC-CGCGUGu--CGGg -5'
28055 5' -61.9 NC_005887.1 + 4684 0.66 0.311001
Target:  5'- aGaCGGCGaggguCUGAUG-GGCGCGCcgaucAGCCg -3'
miRNA:   3'- gC-GCCGC-----GACUACgCCGCGUG-----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 14826 0.66 0.318574
Target:  5'- cCGCGaCGCUGAUgGCGG-GCAC-GUUCg -3'
miRNA:   3'- -GCGCcGCGACUA-CGCCgCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.