Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 9564 | 0.69 | 0.208102 |
Target: 5'- aGCGGCGCgcgccGAUcCuGCGCACgAGCCg -3' miRNA: 3'- gCGCCGCGa----CUAcGcCGCGUG-UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 33943 | 0.69 | 0.207563 |
Target: 5'- cCGaCGGCGCUcGGcgagcacgucgcgUGCGGCGUccguCAGCaCCg -3' miRNA: 3'- -GC-GCCGCGA-CU-------------ACGCCGCGu---GUCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 41918 | 0.69 | 0.20276 |
Target: 5'- cCGCacGUGCUGA-GCGGCuCGCAGCUg -3' miRNA: 3'- -GCGc-CGCGACUaCGCCGcGUGUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 35785 | 0.69 | 0.20276 |
Target: 5'- -uCGGCGCUcaacGAguuguagcGCGGCG-ACAGCCCc -3' miRNA: 3'- gcGCCGCGA----CUa-------CGCCGCgUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 41114 | 0.69 | 0.20276 |
Target: 5'- uCGC-GUGCUGA-GCGcCGCGCAGCgCCc -3' miRNA: 3'- -GCGcCGCGACUaCGCcGCGUGUCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 37446 | 0.69 | 0.20276 |
Target: 5'- gCGCGGCGCUugccugcGCGGUuuGCAguGCgCCg -3' miRNA: 3'- -GCGCCGCGAcua----CGCCG--CGUguCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 37397 | 0.69 | 0.20276 |
Target: 5'- aGCuGGCGCUGc-GCGGuCGCgACuGCCUg -3' miRNA: 3'- gCG-CCGCGACuaCGCC-GCG-UGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 30943 | 0.69 | 0.199612 |
Target: 5'- gCGCucGGCGgUGAUGuCGGCGCccGCGuacgugaggaacuucGCCCa -3' miRNA: 3'- -GCG--CCGCgACUAC-GCCGCG--UGU---------------CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 24947 | 0.69 | 0.197537 |
Target: 5'- aCGCGuGCGCgcggGccGCcuuGCGCGCGGCCg -3' miRNA: 3'- -GCGC-CGCGa---CuaCGc--CGCGUGUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 34595 | 0.69 | 0.197537 |
Target: 5'- aGcCGGCGUaGAUGCGGCcuuccuugcccGC-CAGCCa -3' miRNA: 3'- gC-GCCGCGaCUACGCCG-----------CGuGUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 12628 | 0.69 | 0.197537 |
Target: 5'- gCGCGGCGCgUGAuccUGCGaCGCgACGGCg- -3' miRNA: 3'- -GCGCCGCG-ACU---ACGCcGCG-UGUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 27971 | 0.69 | 0.197537 |
Target: 5'- gCGCGcGCGCcGA-GCGGCGacucgaACAgguGCCCg -3' miRNA: 3'- -GCGC-CGCGaCUaCGCCGCg-----UGU---CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 24880 | 0.69 | 0.197537 |
Target: 5'- gGCGGCgGCcGAUGCcGCGCGCucGGUCUu -3' miRNA: 3'- gCGCCG-CGaCUACGcCGCGUG--UCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 11134 | 0.69 | 0.19446 |
Target: 5'- uCGCGucGUGCUGAagcacGCGGCGCccgaaaucuacgcgcGCAuGCCCg -3' miRNA: 3'- -GCGC--CGCGACUa----CGCCGCG---------------UGU-CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 30460 | 0.69 | 0.192432 |
Target: 5'- uGCcGgGCUGGaacagGCGGUGCgcgacGCGGCCCg -3' miRNA: 3'- gCGcCgCGACUa----CGCCGCG-----UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 13085 | 0.69 | 0.192432 |
Target: 5'- aCGCGGCGCUcGAUcGCGGagugcuGCAgGGCgugCCg -3' miRNA: 3'- -GCGCCGCGA-CUA-CGCCg-----CGUgUCG---GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 28258 | 0.69 | 0.187442 |
Target: 5'- gGCGGU-CUGGU-CGGCGUACAGCg- -3' miRNA: 3'- gCGCCGcGACUAcGCCGCGUGUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 18672 | 0.69 | 0.185968 |
Target: 5'- gCGCGcagucucgucgaacGUGCagGAUGCGGCGCAgGGCa- -3' miRNA: 3'- -GCGC--------------CGCGa-CUACGCCGCGUgUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 36920 | 0.69 | 0.182086 |
Target: 5'- aGCgGGCGCgUGGucgcgccggucgcUGCGGCGC-C-GCCCg -3' miRNA: 3'- gCG-CCGCG-ACU-------------ACGCCGCGuGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 34711 | 0.7 | 0.177805 |
Target: 5'- uCGUcGCGCU--UGCGGUGCGCGGCg- -3' miRNA: 3'- -GCGcCGCGAcuACGCCGCGUGUCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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