miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 28333 0.74 0.089945
Target:  5'- gGCGGCGCgccgGcgGUugcggaGGCGCGCGGCgCa -3'
miRNA:   3'- gCGCCGCGa---CuaCG------CCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 28547 0.66 0.303564
Target:  5'- gCGCcgGGCuGCUGAauuUGUaGGCGuCGCcGCCCg -3'
miRNA:   3'- -GCG--CCG-CGACU---ACG-CCGC-GUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 28804 0.7 0.172694
Target:  5'- gGCGGCaGCgcaucgccGAUcgcauucgcgaucGUGGCGCGCAuGCCCg -3'
miRNA:   3'- gCGCCG-CGa-------CUA-------------CGCCGCGUGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 28898 0.7 0.161563
Target:  5'- gCGCGcccgucaggaugaacGUGCUGA-GCGGUGCGCcGCUCg -3'
miRNA:   3'- -GCGC---------------CGCGACUaCGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29020 0.68 0.213566
Target:  5'- gCGCGGCGagauccgcGAUGCGGCcgGCGuuGCCg -3'
miRNA:   3'- -GCGCCGCga------CUACGCCG--CGUguCGGg -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 29617 0.66 0.311001
Target:  5'- gCGCGGCGC-GAU-CGaGCGCAUucuGCUg -3'
miRNA:   3'- -GCGCCGCGaCUAcGC-CGCGUGu--CGGg -5'
28055 5' -61.9 NC_005887.1 + 29661 0.67 0.288395
Target:  5'- gCGCGGCGCgaGGUagcacaGCuGGCGCuugcuugGCAGCUg -3'
miRNA:   3'- -GCGCCGCGa-CUA------CG-CCGCG-------UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 29878 0.66 0.311001
Target:  5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3'
miRNA:   3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30156 0.72 0.115087
Target:  5'- gCGCGGCGCUGuccuucGCGGUcuGCauguucuGCAGCCa -3'
miRNA:   3'- -GCGCCGCGACua----CGCCG--CG-------UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 30306 0.66 0.329409
Target:  5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3'
miRNA:   3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5'
28055 5' -61.9 NC_005887.1 + 30460 0.69 0.192432
Target:  5'- uGCcGgGCUGGaacagGCGGUGCgcgacGCGGCCCg -3'
miRNA:   3'- gCGcCgCGACUa----CGCCGCG-----UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30943 0.69 0.199612
Target:  5'- gCGCucGGCGgUGAUGuCGGCGCccGCGuacgugaggaacuucGCCCa -3'
miRNA:   3'- -GCG--CCGCgACUAC-GCCGCG--UGU---------------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 30956 0.66 0.299169
Target:  5'- gGCGGCGCcGGccgccagcgcuccgGCuGCGCugAcGCCCg -3'
miRNA:   3'- gCGCCGCGaCUa-------------CGcCGCGugU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 30995 0.66 0.334135
Target:  5'- uCGgGGUGCgucucucgcgUGgcGCGGCGCA-GGCCa -3'
miRNA:   3'- -GCgCCGCG----------ACuaCGCCGCGUgUCGGg -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 32427 0.71 0.15149
Target:  5'- gGCGGCGaugUGGccgGCGGCgaucagguuGCGCAGCCa -3'
miRNA:   3'- gCGCCGCg--ACUa--CGCCG---------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 32742 0.73 0.097776
Target:  5'- gCGCGGCGCUcgcGUGCgcgccGGCGCGC-GCCa -3'
miRNA:   3'- -GCGCCGCGAc--UACG-----CCGCGUGuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.