miRNA display CGI


Results 101 - 120 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 33162 0.67 0.27519
Target:  5'- cCGCGGCGgUGcuucgugcauucGUaGCGGcCGgACgAGCCCg -3'
miRNA:   3'- -GCGCCGCgAC------------UA-CGCC-GCgUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33837 0.68 0.236663
Target:  5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3'
miRNA:   3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33943 0.69 0.207563
Target:  5'- cCGaCGGCGCUcGGcgagcacgucgcgUGCGGCGUccguCAGCaCCg -3'
miRNA:   3'- -GC-GCCGCGA-CU-------------ACGCCGCGu---GUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 34595 0.69 0.197537
Target:  5'- aGcCGGCGUaGAUGCGGCcuuccuugcccGC-CAGCCa -3'
miRNA:   3'- gC-GCCGCGaCUACGCCG-----------CGuGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 34711 0.7 0.177805
Target:  5'- uCGUcGCGCU--UGCGGUGCGCGGCg- -3'
miRNA:   3'- -GCGcCGCGAcuACGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 34968 0.66 0.326286
Target:  5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3'
miRNA:   3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 35375 0.74 0.088453
Target:  5'- aCGCGGgccugcagcagcucaUGCUcGAUGCGcccGCGCACGGCCUu -3'
miRNA:   3'- -GCGCC---------------GCGA-CUACGC---CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 35785 0.69 0.20276
Target:  5'- -uCGGCGCUcaacGAguuguagcGCGGCG-ACAGCCCc -3'
miRNA:   3'- gcGCCGCGA----CUa-------CGCCGCgUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 36845 0.72 0.115404
Target:  5'- gGcCGGUGCUGcgGcCGGUGCuGCGGCCg -3'
miRNA:   3'- gC-GCCGCGACuaC-GCCGCG-UGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 36920 0.69 0.182086
Target:  5'- aGCgGGCGCgUGGucgcgccggucgcUGCGGCGC-C-GCCCg -3'
miRNA:   3'- gCG-CCGCG-ACU-------------ACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37028 0.68 0.242755
Target:  5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3'
miRNA:   3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37077 0.66 0.318574
Target:  5'- uGaCGGCGUUcgcaccGAaGCGGgcgaGCACAGCCUc -3'
miRNA:   3'- gC-GCCGCGA------CUaCGCCg---CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 37397 0.69 0.20276
Target:  5'- aGCuGGCGCUGc-GCGGuCGCgACuGCCUg -3'
miRNA:   3'- gCG-CCGCGACuaCGCC-GCG-UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37446 0.69 0.20276
Target:  5'- gCGCGGCGCUugccugcGCGGUuuGCAguGCgCCg -3'
miRNA:   3'- -GCGCCGCGAcua----CGCCG--CGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 37746 0.66 0.318574
Target:  5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3'
miRNA:   3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 38549 0.66 0.334135
Target:  5'- uGCGaaagcCGCUguucugcacGAUGCGGU-CGCGGCCCu -3'
miRNA:   3'- gCGCc----GCGA---------CUACGCCGcGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 38634 0.73 0.092487
Target:  5'- gCGCGGauCGC-GGU-CGGCGCGCGGCUCg -3'
miRNA:   3'- -GCGCC--GCGaCUAcGCCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 39117 0.75 0.069684
Target:  5'- aGCGGCGCggucGAaucgaacaucuucUGCGaGCGCucGCGGCCCu -3'
miRNA:   3'- gCGCCGCGa---CU-------------ACGC-CGCG--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 39342 0.68 0.219152
Target:  5'- cCGCGGCGCUGGccGCaGGCGCguugACGGaCg -3'
miRNA:   3'- -GCGCCGCGACUa-CG-CCGCG----UGUCgGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.