miRNA display CGI


Results 121 - 132 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 39411 0.78 0.041894
Target:  5'- uCGCGGCGgUGccGCGGCGCuugcGCAGCUUg -3'
miRNA:   3'- -GCGCCGCgACuaCGCCGCG----UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 40015 0.66 0.318574
Target:  5'- uCGCGGUGCgcaucaUGgcGCGGCucgaggcgGC-CGGCCUa -3'
miRNA:   3'- -GCGCCGCG------ACuaCGCCG--------CGuGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 40497 0.67 0.253411
Target:  5'- gCGUGGCGCgacgucguGUucggcauccaccacGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCGCGac------UA--------------CGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 41114 0.69 0.20276
Target:  5'- uCGC-GUGCUGA-GCGcCGCGCAGCgCCc -3'
miRNA:   3'- -GCGcCGCGACUaCGCcGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 41597 0.8 0.027223
Target:  5'- aGCGGCgGCccaGGUGCGGCggccgGCGCGGCCCg -3'
miRNA:   3'- gCGCCG-CGa--CUACGCCG-----CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 41729 0.67 0.255331
Target:  5'- gGCGGCGauccGAUccCGGCGCGCGGgCUCu -3'
miRNA:   3'- gCGCCGCga--CUAc-GCCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 41796 0.71 0.143535
Target:  5'- gGCGgucuucGCGCUGuauccggcGCGGCGCGCGGCggCCg -3'
miRNA:   3'- gCGC------CGCGACua------CGCCGCGUGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 41918 0.69 0.20276
Target:  5'- cCGCacGUGCUGA-GCGGCuCGCAGCUg -3'
miRNA:   3'- -GCGc-CGCGACUaCGCCGcGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 41947 0.77 0.046968
Target:  5'- gCGCGGCGCgucuucGCGGCGCuu-GCCCg -3'
miRNA:   3'- -GCGCCGCGacua--CGCCGCGuguCGGG- -5'
28055 5' -61.9 NC_005887.1 + 41962 0.74 0.08506
Target:  5'- gCGUGGUGCgugcGCGGCGCGCucGCCUa -3'
miRNA:   3'- -GCGCCGCGacuaCGCCGCGUGu-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 42026 0.68 0.224286
Target:  5'- cCGCGGCGCgcGAUGCguacaaGGCGgACAuggaccuGCUCg -3'
miRNA:   3'- -GCGCCGCGa-CUACG------CCGCgUGU-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 42187 0.7 0.173153
Target:  5'- uCGCGcGCGCUGGcucgucgcauUGCuGCGCGCGGUUUu -3'
miRNA:   3'- -GCGC-CGCGACU----------ACGcCGCGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.