miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 26408 0.75 0.067745
Target:  5'- uGCGGCGCgug-GcCGGCGCAucgauucCGGCCCg -3'
miRNA:   3'- gCGCCGCGacuaC-GCCGCGU-------GUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 26224 0.68 0.219152
Target:  5'- gGCGGgGUgguUGCGcGCgGCGCAGCgCCa -3'
miRNA:   3'- gCGCCgCGacuACGC-CG-CGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 26209 0.71 0.143535
Target:  5'- gGCGGCGgUGGccggccUGCagcuGGCGCACGGgUCCg -3'
miRNA:   3'- gCGCCGCgACU------ACG----CCGCGUGUC-GGG- -5'
28055 5' -61.9 NC_005887.1 + 25153 0.73 0.103349
Target:  5'- gCGCGGCGCaacauUGCcGCGUGCGGCCg -3'
miRNA:   3'- -GCGCCGCGacu--ACGcCGCGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 25046 0.71 0.132318
Target:  5'- aCGCGGUGCgccGAaccgGCGuuugcGCGCGCGGCgCCg -3'
miRNA:   3'- -GCGCCGCGa--CUa---CGC-----CGCGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 24947 0.69 0.197537
Target:  5'- aCGCGuGCGCgcggGccGCcuuGCGCGCGGCCg -3'
miRNA:   3'- -GCGC-CGCGa---CuaCGc--CGCGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 24880 0.69 0.197537
Target:  5'- gGCGGCgGCcGAUGCcGCGCGCucGGUCUu -3'
miRNA:   3'- gCGCCG-CGaCUACGcCGCGUG--UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 24723 0.67 0.268436
Target:  5'- -aCGGCGCUGAccGUcGUGCGCAGCg- -3'
miRNA:   3'- gcGCCGCGACUa-CGcCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 24603 0.68 0.213566
Target:  5'- uCGCGGCGaUGAucuUGCGGCcGCACgcguGGUCg -3'
miRNA:   3'- -GCGCCGCgACU---ACGCCG-CGUG----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 23946 0.66 0.334135
Target:  5'- uCGCGGCGUc--UGCGcaCGCACcgacgaccucGGCCCa -3'
miRNA:   3'- -GCGCCGCGacuACGCc-GCGUG----------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 23364 0.7 0.173153
Target:  5'- cCGCGGCGCUcgcaGAUGCuuuugcugcucGCGCugccgcugGCAGCCUg -3'
miRNA:   3'- -GCGCCGCGA----CUACGc----------CGCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 23245 0.67 0.255331
Target:  5'- aGCGGCgGC-GGU-CGGCGCgcaaaaggcGCAGCUCg -3'
miRNA:   3'- gCGCCG-CGaCUAcGCCGCG---------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 22795 0.67 0.259857
Target:  5'- gCGCGGcCGCUGuuguucacgagcuacGCGGCGCAUccgaacguGCUCa -3'
miRNA:   3'- -GCGCC-GCGACua-------------CGCCGCGUGu-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 22202 0.68 0.242755
Target:  5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3'
miRNA:   3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 21815 0.75 0.071878
Target:  5'- cCGCGGCGCUGccG-GGCGCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -GCGCCGCGACuaCgCCGCGUG----------UCGGg -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 19056 0.68 0.248978
Target:  5'- uGCGGCGUUGuucuuCGGCGCgggcuGCGGCaaCCg -3'
miRNA:   3'- gCGCCGCGACuac--GCCGCG-----UGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 18672 0.69 0.185968
Target:  5'- gCGCGcagucucgucgaacGUGCagGAUGCGGCGCAgGGCa- -3'
miRNA:   3'- -GCGC--------------CGCGa-CUACGCCGCGUgUCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.