miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 16493 0.68 0.248978
Target:  5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3'
miRNA:   3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5'
28055 5' -61.9 NC_005887.1 + 16119 0.68 0.236663
Target:  5'- gGUGGCGCUGc-GCcGCGCGCAaccacCCCg -3'
miRNA:   3'- gCGCCGCGACuaCGcCGCGUGUc----GGG- -5'
28055 5' -61.9 NC_005887.1 + 15821 0.67 0.289104
Target:  5'- aCGaGGCGCaGGUGCaGCGCuugcGCGGCgCg -3'
miRNA:   3'- -GCgCCGCGaCUACGcCGCG----UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 15389 0.72 0.118617
Target:  5'- aCGCcGCGCUGAUcGCGcGCGgGCAGCg- -3'
miRNA:   3'- -GCGcCGCGACUA-CGC-CGCgUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 14826 0.66 0.318574
Target:  5'- cCGCGaCGCUGAUgGCGG-GCAC-GUUCg -3'
miRNA:   3'- -GCGCcGCGACUA-CGCCgCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 14543 0.67 0.289104
Target:  5'- gGCGGCGCgucgaucgGcAUGUcGCGCGCGGaagaCCu -3'
miRNA:   3'- gCGCCGCGa-------C-UACGcCGCGUGUCg---GG- -5'
28055 5' -61.9 NC_005887.1 + 14505 0.7 0.173153
Target:  5'- cCGCGGUGCUug-GUGGUccgcuugcagGCGCGGCCg -3'
miRNA:   3'- -GCGCCGCGAcuaCGCCG----------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 14156 1.11 0.000104
Target:  5'- gCGCGGCGCUGAUGCGGCGCACAGCCCg -3'
miRNA:   3'- -GCGCCGCGACUACGCCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13622 0.77 0.051162
Target:  5'- gCGCGGCGC-GcgGCGGcCGCACucAGCCg -3'
miRNA:   3'- -GCGCCGCGaCuaCGCC-GCGUG--UCGGg -5'
28055 5' -61.9 NC_005887.1 + 13414 0.74 0.089945
Target:  5'- gGCGGCaagccgcuGCUGAcgacgaGCGGCGCACcGCUCa -3'
miRNA:   3'- gCGCCG--------CGACUa-----CGCCGCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13085 0.69 0.192432
Target:  5'- aCGCGGCGCUcGAUcGCGGagugcuGCAgGGCgugCCg -3'
miRNA:   3'- -GCGCCGCGA-CUA-CGCCg-----CGUgUCG---GG- -5'
28055 5' -61.9 NC_005887.1 + 12628 0.69 0.197537
Target:  5'- gCGCGGCGCgUGAuccUGCGaCGCgACGGCg- -3'
miRNA:   3'- -GCGCCGCG-ACU---ACGCcGCG-UGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 11845 0.72 0.115404
Target:  5'- aCGCGG-GCUGAugcaguuuUGCGGUGCGCAacgcacggGCCg -3'
miRNA:   3'- -GCGCCgCGACU--------ACGCCGCGUGU--------CGGg -5'
28055 5' -61.9 NC_005887.1 + 11529 0.75 0.071878
Target:  5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 11190 0.74 0.082482
Target:  5'- aGUGGCGCgacacgaUGGUGCaggcguauGCGCACGGCCUg -3'
miRNA:   3'- gCGCCGCG-------ACUACGc-------CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11134 0.69 0.19446
Target:  5'- uCGCGucGUGCUGAagcacGCGGCGCccgaaaucuacgcgcGCAuGCCCg -3'
miRNA:   3'- -GCGC--CGCGACUa----CGCCGCG---------------UGU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.