Results 101 - 120 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 11004 | 0.71 | 0.147464 |
Target: 5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3' miRNA: 3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 10431 | 0.78 | 0.040711 |
Target: 5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3' miRNA: 3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 10030 | 0.71 | 0.147464 |
Target: 5'- -uCGGCGUgUGGuccuacgcacUGCGGCGCGCcggcuGGCCCg -3' miRNA: 3'- gcGCCGCG-ACU----------ACGCCGCGUG-----UCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 9564 | 0.69 | 0.208102 |
Target: 5'- aGCGGCGCgcgccGAUcCuGCGCACgAGCCg -3' miRNA: 3'- gCGCCGCGa----CUAcGcCGCGUG-UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 8977 | 0.67 | 0.277243 |
Target: 5'- gGCGGCacccuacgcagaaGCUGcUGCGcacaaGCGCgacgacguuuucucuGCAGCCCg -3' miRNA: 3'- gCGCCG-------------CGACuACGC-----CGCG---------------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 8067 | 0.7 | 0.173153 |
Target: 5'- uGCGuGCGCacgucUGGUcguucacgaaaGCGcGCGCGCAGCUCg -3' miRNA: 3'- gCGC-CGCG-----ACUA-----------CGC-CGCGUGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 7840 | 0.74 | 0.082713 |
Target: 5'- uGCGGC-CUGAUG-GGCGUGCAGUaCCa -3' miRNA: 3'- gCGCCGcGACUACgCCGCGUGUCG-GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 7603 | 0.73 | 0.103349 |
Target: 5'- aGCGGCGCcGGUugaucgauggGCGGCGacuGCuGCCCg -3' miRNA: 3'- gCGCCGCGaCUA----------CGCCGCg--UGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 7130 | 0.67 | 0.289104 |
Target: 5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3' miRNA: 3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 7017 | 0.71 | 0.143535 |
Target: 5'- uCGUGGCcgGCcGccGCGGCGCGCGGCa- -3' miRNA: 3'- -GCGCCG--CGaCuaCGCCGCGUGUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 6319 | 0.67 | 0.255331 |
Target: 5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3' miRNA: 3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 6046 | 0.7 | 0.155616 |
Target: 5'- gGUGGUGCUGGUggcaGCGGCGCgGCA-CUCa -3' miRNA: 3'- gCGCCGCGACUA----CGCCGCG-UGUcGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 6040 | 0.67 | 0.27519 |
Target: 5'- gCGCGGCGUcGAccGCcGCGCAgauCGGCCa -3' miRNA: 3'- -GCGCCGCGaCUa-CGcCGCGU---GUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 5764 | 0.68 | 0.247097 |
Target: 5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3' miRNA: 3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4755 | 0.66 | 0.326286 |
Target: 5'- gGCGGUGCUuuUGCGacgaGCGCGggaagcugacgcCAGCCg -3' miRNA: 3'- gCGCCGCGAcuACGC----CGCGU------------GUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4684 | 0.66 | 0.311001 |
Target: 5'- aGaCGGCGaggguCUGAUG-GGCGCGCcgaucAGCCg -3' miRNA: 3'- gC-GCCGC-----GACUACgCCGCGUG-----UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4624 | 0.68 | 0.236663 |
Target: 5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3' miRNA: 3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4354 | 0.74 | 0.080428 |
Target: 5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3' miRNA: 3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 2831 | 0.73 | 0.102495 |
Target: 5'- aGcCGGCGCcaguUGGUGCGGCGUGaacuuccaguucguCAGCCUg -3' miRNA: 3'- gC-GCCGCG----ACUACGCCGCGU--------------GUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 2539 | 0.7 | 0.172694 |
Target: 5'- gCGCaaGGCGCUGucggGCGGCuacugcuuccgccGCAUGGCCg -3' miRNA: 3'- -GCG--CCGCGACua--CGCCG-------------CGUGUCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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