miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 4354 0.74 0.080428
Target:  5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3'
miRNA:   3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 21815 0.75 0.071878
Target:  5'- cCGCGGCGCUGccG-GGCGCGCcgaaugaaacGGCCa -3'
miRNA:   3'- -GCGCCGCGACuaCgCCGCGUG----------UCGGg -5'
28055 5' -61.9 NC_005887.1 + 11529 0.75 0.071878
Target:  5'- aCGCGGUcaaGCUGAUcagcagcuCGGCGCGCAGCgCg -3'
miRNA:   3'- -GCGCCG---CGACUAc-------GCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 13622 0.77 0.051162
Target:  5'- gCGCGGCGC-GcgGCGGcCGCACucAGCCg -3'
miRNA:   3'- -GCGCCGCGaCuaCGCC-GCGUG--UCGGg -5'
28055 5' -61.9 NC_005887.1 + 10431 0.78 0.040711
Target:  5'- uCGCGGUGCUGAccGaCGGCGCAguGCaCCc -3'
miRNA:   3'- -GCGCCGCGACUa-C-GCCGCGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 27653 0.72 0.115404
Target:  5'- uGUGcGCGCUGAgcUGcCGcGCGCGCGGCUUg -3'
miRNA:   3'- gCGC-CGCGACU--AC-GC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 15389 0.72 0.118617
Target:  5'- aCGCcGCGCUGAUcGCGcGCGgGCAGCg- -3'
miRNA:   3'- -GCGcCGCGACUA-CGC-CGCgUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 13085 0.69 0.192432
Target:  5'- aCGCGGCGCUcGAUcGCGGagugcuGCAgGGCgugCCg -3'
miRNA:   3'- -GCGCCGCGA-CUA-CGCCg-----CGUgUCG---GG- -5'
28055 5' -61.9 NC_005887.1 + 30460 0.69 0.192432
Target:  5'- uGCcGgGCUGGaacagGCGGUGCgcgacGCGGCCCg -3'
miRNA:   3'- gCGcCgCGACUa----CGCCGCG-----UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 18672 0.69 0.185968
Target:  5'- gCGCGcagucucgucgaacGUGCagGAUGCGGCGCAgGGCa- -3'
miRNA:   3'- -GCGC--------------CGCGa-CUACGCCGCGUgUCGgg -5'
28055 5' -61.9 NC_005887.1 + 34711 0.7 0.177805
Target:  5'- uCGUcGCGCU--UGCGGUGCGCGGCg- -3'
miRNA:   3'- -GCGcCGCGAcuACGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 23364 0.7 0.173153
Target:  5'- cCGCGGCGCUcgcaGAUGCuuuugcugcucGCGCugccgcugGCAGCCUg -3'
miRNA:   3'- -GCGCCGCGA----CUACGc----------CGCG--------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 14505 0.7 0.173153
Target:  5'- cCGCGGUGCUug-GUGGUccgcuugcagGCGCGGCCg -3'
miRNA:   3'- -GCGCCGCGAcuaCGCCG----------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 42187 0.7 0.173153
Target:  5'- uCGCGcGCGCUGGcucgucgcauUGCuGCGCGCGGUUUu -3'
miRNA:   3'- -GCGC-CGCGACU----------ACGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 8067 0.7 0.173153
Target:  5'- uGCGuGCGCacgucUGGUcguucacgaaaGCGcGCGCGCAGCUCg -3'
miRNA:   3'- gCGC-CGCG-----ACUA-----------CGC-CGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2539 0.7 0.172694
Target:  5'- gCGCaaGGCGCUGucggGCGGCuacugcuuccgccGCAUGGCCg -3'
miRNA:   3'- -GCG--CCGCGACua--CGCCG-------------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 6046 0.7 0.155616
Target:  5'- gGUGGUGCUGGUggcaGCGGCGCgGCA-CUCa -3'
miRNA:   3'- gCGCCGCGACUA----CGCCGCG-UGUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 32427 0.71 0.15149
Target:  5'- gGCGGCGaugUGGccgGCGGCgaucagguuGCGCAGCCa -3'
miRNA:   3'- gCGCCGCg--ACUa--CGCCG---------CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 11004 0.71 0.147464
Target:  5'- gCGUGGUGCUcgGGUGCGGCGguCuGGUCg -3'
miRNA:   3'- -GCGCCGCGA--CUACGCCGCguG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 26209 0.71 0.143535
Target:  5'- gGCGGCGgUGGccggccUGCagcuGGCGCACGGgUCCg -3'
miRNA:   3'- gCGCCGCgACU------ACG----CCGCGUGUC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.