miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37746 0.66 0.318574
Target:  5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3'
miRNA:   3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 34968 0.66 0.326286
Target:  5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3'
miRNA:   3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 30306 0.66 0.329409
Target:  5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3'
miRNA:   3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 6040 0.67 0.27519
Target:  5'- gCGCGGCGUcGAccGCcGCGCAgauCGGCCa -3'
miRNA:   3'- -GCGCCGCGaCUa-CGcCGCGU---GUCGGg -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 39342 0.68 0.219152
Target:  5'- cCGCGGCGCUGGccGCaGGCGCguugACGGaCg -3'
miRNA:   3'- -GCGCCGCGACUa-CG-CCGCG----UGUCgGg -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 19056 0.68 0.248978
Target:  5'- uGCGGCGUUGuucuuCGGCGCgggcuGCGGCaaCCg -3'
miRNA:   3'- gCGCCGCGACuac--GCCGCG-----UGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 24723 0.67 0.268436
Target:  5'- -aCGGCGCUGAccGUcGUGCGCAGCg- -3'
miRNA:   3'- gcGCCGCGACUa-CGcCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.