miRNA display CGI


Results 121 - 132 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 29020 0.68 0.213566
Target:  5'- gCGCGGCGagauccgcGAUGCGGCcgGCGuuGCCg -3'
miRNA:   3'- -GCGCCGCga------CUACGCCG--CGUguCGGg -5'
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 26224 0.68 0.219152
Target:  5'- gGCGGgGUgguUGCGcGCgGCGCAGCgCCa -3'
miRNA:   3'- gCGCCgCGacuACGC-CG-CGUGUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 39342 0.68 0.219152
Target:  5'- cCGCGGCGCUGGccGCaGGCGCguugACGGaCg -3'
miRNA:   3'- -GCGCCGCGACUa-CG-CCGCG----UGUCgGg -5'
28055 5' -61.9 NC_005887.1 + 21229 0.68 0.24214
Target:  5'- uCGUGGCGUUGGcgagcaccguguuUGCGGCG-ACcGCgCCg -3'
miRNA:   3'- -GCGCCGCGACU-------------ACGCCGCgUGuCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 19056 0.68 0.248978
Target:  5'- uGCGGCGUUGuucuuCGGCGCgggcuGCGGCaaCCg -3'
miRNA:   3'- gCGCCGCGACuac--GCCGCG-----UGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 12389 0.67 0.255331
Target:  5'- gCGCGGCGgUGuucGCGGCGCucgACA-CCg -3'
miRNA:   3'- -GCGCCGCgACua-CGCCGCG---UGUcGGg -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 38549 0.66 0.334135
Target:  5'- uGCGaaagcCGCUguucugcacGAUGCGGU-CGCGGCCCu -3'
miRNA:   3'- gCGCc----GCGA---------CUACGCCGcGUGUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.