miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 12628 0.69 0.197537
Target:  5'- gCGCGGCGCgUGAuccUGCGaCGCgACGGCg- -3'
miRNA:   3'- -GCGCCGCG-ACU---ACGCcGCG-UGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 27971 0.69 0.197537
Target:  5'- gCGCGcGCGCcGA-GCGGCGacucgaACAgguGCCCg -3'
miRNA:   3'- -GCGC-CGCGaCUaCGCCGCg-----UGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 39117 0.75 0.069684
Target:  5'- aGCGGCGCggucGAaucgaacaucuucUGCGaGCGCucGCGGCCCu -3'
miRNA:   3'- gCGCCGCGa---CU-------------ACGC-CGCG--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 28333 0.74 0.089945
Target:  5'- gGCGGCGCgccgGcgGUugcggaGGCGCGCGGCgCa -3'
miRNA:   3'- gCGCCGCGa---CuaCG------CCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 25153 0.73 0.103349
Target:  5'- gCGCGGCGCaacauUGCcGCGUGCGGCCg -3'
miRNA:   3'- -GCGCCGCGacu--ACGcCGCGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 26675 0.71 0.131958
Target:  5'- gCGCGGCGgUGAgcUGgucgagcuCGGCGCGCAucugcgacacggcGCCCu -3'
miRNA:   3'- -GCGCCGCgACU--AC--------GCCGCGUGU-------------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 41796 0.71 0.143535
Target:  5'- gGCGgucuucGCGCUGuauccggcGCGGCGCGCGGCggCCg -3'
miRNA:   3'- gCGC------CGCGACua------CGCCGCGUGUCG--GG- -5'
28055 5' -61.9 NC_005887.1 + 27357 0.7 0.16861
Target:  5'- gGCGGCaCgccUGCGGCcuGCGCGGCCUn -3'
miRNA:   3'- gCGCCGcGacuACGCCG--CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 28258 0.69 0.187442
Target:  5'- gGCGGU-CUGGU-CGGCGUACAGCg- -3'
miRNA:   3'- gCGCCGcGACUAcGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 9564 0.69 0.208102
Target:  5'- aGCGGCGCgcgccGAUcCuGCGCACgAGCCg -3'
miRNA:   3'- gCGCCGCGa----CUAcGcCGCGUG-UCGGg -5'
28055 5' -61.9 NC_005887.1 + 1581 0.68 0.213566
Target:  5'- cCGcCGGCuCg---GCGGCGCGCGGCgCg -3'
miRNA:   3'- -GC-GCCGcGacuaCGCCGCGUGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 5764 0.68 0.247097
Target:  5'- gCGCGGCGUcaucuaUGcAUGCacuacugcgaagcaGGCGCACGaacGCCUg -3'
miRNA:   3'- -GCGCCGCG------AC-UACG--------------CCGCGUGU---CGGG- -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.