Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28055 | 5' | -61.9 | NC_005887.1 | + | 41962 | 0.74 | 0.08506 |
Target: 5'- gCGUGGUGCgugcGCGGCGCGCucGCCUa -3' miRNA: 3'- -GCGCCGCGacuaCGCCGCGUGu-CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4354 | 0.74 | 0.080428 |
Target: 5'- aCGcCGGCGCgGAUGUGGaUGUcgaguacgACAGCCCg -3' miRNA: 3'- -GC-GCCGCGaCUACGCC-GCG--------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 37028 | 0.68 | 0.242755 |
Target: 5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3' miRNA: 3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 16493 | 0.68 | 0.248978 |
Target: 5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3' miRNA: 3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 29878 | 0.66 | 0.311001 |
Target: 5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3' miRNA: 3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 4684 | 0.66 | 0.311001 |
Target: 5'- aGaCGGCGaggguCUGAUG-GGCGCGCcgaucAGCCg -3' miRNA: 3'- gC-GCCGC-----GACUACgCCGCGUG-----UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 11097 | 0.66 | 0.303564 |
Target: 5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3' miRNA: 3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 28547 | 0.66 | 0.303564 |
Target: 5'- gCGCcgGGCuGCUGAauuUGUaGGCGuCGCcGCCCg -3' miRNA: 3'- -GCG--CCG-CGACU---ACG-CCGC-GUGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 15821 | 0.67 | 0.289104 |
Target: 5'- aCGaGGCGCaGGUGCaGCGCuugcGCGGCgCg -3' miRNA: 3'- -GCgCCGCGaCUACGcCGCG----UGUCGgG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 14543 | 0.67 | 0.289104 |
Target: 5'- gGCGGCGCgucgaucgGcAUGUcGCGCGCGGaagaCCu -3' miRNA: 3'- gCGCCGCGa-------C-UACGcCGCGUGUCg---GG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 7130 | 0.67 | 0.289104 |
Target: 5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3' miRNA: 3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 29661 | 0.67 | 0.288395 |
Target: 5'- gCGCGGCGCgaGGUagcacaGCuGGCGCuugcuugGCAGCUg -3' miRNA: 3'- -GCGCCGCGa-CUA------CG-CCGCG-------UGUCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 8977 | 0.67 | 0.277243 |
Target: 5'- gGCGGCacccuacgcagaaGCUGcUGCGcacaaGCGCgacgacguuuucucuGCAGCCCg -3' miRNA: 3'- gCGCCG-------------CGACuACGC-----CGCG---------------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 33162 | 0.67 | 0.27519 |
Target: 5'- cCGCGGCGgUGcuucgugcauucGUaGCGGcCGgACgAGCCCg -3' miRNA: 3'- -GCGCCGCgAC------------UA-CGCC-GCgUG-UCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 22795 | 0.67 | 0.259857 |
Target: 5'- gCGCGGcCGCUGuuguucacgagcuacGCGGCGCAUccgaacguGCUCa -3' miRNA: 3'- -GCGCC-GCGACua-------------CGCCGCGUGu-------CGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 41729 | 0.67 | 0.255331 |
Target: 5'- gGCGGCGauccGAUccCGGCGCGCGGgCUCu -3' miRNA: 3'- gCGCCGCga--CUAc-GCCGCGUGUC-GGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 23245 | 0.67 | 0.255331 |
Target: 5'- aGCGGCgGC-GGU-CGGCGCgcaaaaggcGCAGCUCg -3' miRNA: 3'- gCGCCG-CGaCUAcGCCGCG---------UGUCGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 6319 | 0.67 | 0.255331 |
Target: 5'- aCGUGGCGCaagcUGuacgGCGGCGUuCuGCCg -3' miRNA: 3'- -GCGCCGCG----ACua--CGCCGCGuGuCGGg -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 12473 | 0.67 | 0.25405 |
Target: 5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3' miRNA: 3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5' |
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28055 | 5' | -61.9 | NC_005887.1 | + | 40497 | 0.67 | 0.253411 |
Target: 5'- gCGUGGCGCgacgucguGUucggcauccaccacGCGGCGCGCGGCa- -3' miRNA: 3'- -GCGCCGCGac------UA--------------CGCCGCGUGUCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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