miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 29878 0.66 0.311001
Target:  5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3'
miRNA:   3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 7130 0.67 0.289104
Target:  5'- gGCGGCGC---UGCGGCGC-C-GUUCa -3'
miRNA:   3'- gCGCCGCGacuACGCCGCGuGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 28547 0.66 0.303564
Target:  5'- gCGCcgGGCuGCUGAauuUGUaGGCGuCGCcGCCCg -3'
miRNA:   3'- -GCG--CCG-CGACU---ACG-CCGC-GUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 15821 0.67 0.289104
Target:  5'- aCGaGGCGCaGGUGCaGCGCuugcGCGGCgCg -3'
miRNA:   3'- -GCgCCGCGaCUACGcCGCG----UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 12473 0.67 0.25405
Target:  5'- aCGCGcgcuucucagcucGCGCUGAUcgauucaGCGGCGCugGaUCCg -3'
miRNA:   3'- -GCGC-------------CGCGACUA-------CGCCGCGugUcGGG- -5'
28055 5' -61.9 NC_005887.1 + 40497 0.67 0.253411
Target:  5'- gCGUGGCGCgacgucguGUucggcauccaccacGCGGCGCGCGGCa- -3'
miRNA:   3'- -GCGCCGCGac------UA--------------CGCCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 16119 0.68 0.236663
Target:  5'- gGUGGCGCUGc-GCcGCGCGCAaccacCCCg -3'
miRNA:   3'- gCGCCGCGACuaCGcCGCGUGUc----GGG- -5'
28055 5' -61.9 NC_005887.1 + 37397 0.69 0.20276
Target:  5'- aGCuGGCGCUGc-GCGGuCGCgACuGCCUg -3'
miRNA:   3'- gCG-CCGCGACuaCGCC-GCG-UGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37446 0.69 0.20276
Target:  5'- gCGCGGCGCUugccugcGCGGUuuGCAguGCgCCg -3'
miRNA:   3'- -GCGCCGCGAcua----CGCCG--CGUguCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 41918 0.69 0.20276
Target:  5'- cCGCacGUGCUGA-GCGGCuCGCAGCUg -3'
miRNA:   3'- -GCGc-CGCGACUaCGCCGcGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 33943 0.69 0.207563
Target:  5'- cCGaCGGCGCUcGGcgagcacgucgcgUGCGGCGUccguCAGCaCCg -3'
miRNA:   3'- -GC-GCCGCGA-CU-------------ACGCCGCGu---GUCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 24603 0.68 0.213566
Target:  5'- uCGCGGCGaUGAucuUGCGGCcGCACgcguGGUCg -3'
miRNA:   3'- -GCGCCGCgACU---ACGCCG-CGUG----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 42026 0.68 0.224286
Target:  5'- cCGCGGCGCgcGAUGCguacaaGGCGgACAuggaccuGCUCg -3'
miRNA:   3'- -GCGCCGCGa-CUACG------CCGCgUGU-------CGGG- -5'
28055 5' -61.9 NC_005887.1 + 2472 0.68 0.236663
Target:  5'- aCGaGGCGCUGAcGCGGauCAUcgacggcgAGCCCg -3'
miRNA:   3'- -GCgCCGCGACUaCGCCgcGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 33837 0.68 0.236663
Target:  5'- gCGCGGCGaucGAacgcaUGCagGGCGUACgAGCCUg -3'
miRNA:   3'- -GCGCCGCga-CU-----ACG--CCGCGUG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4624 0.68 0.236663
Target:  5'- cCGCGGCGCcGGUGgccgcCGGCGCGaucaaggaucuCAGCg- -3'
miRNA:   3'- -GCGCCGCGaCUAC-----GCCGCGU-----------GUCGgg -5'
28055 5' -61.9 NC_005887.1 + 22202 0.68 0.242755
Target:  5'- -cCGGCGCg---GCGGuCGCAUauuacgguGGCCCg -3'
miRNA:   3'- gcGCCGCGacuaCGCC-GCGUG--------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 16493 0.68 0.248978
Target:  5'- gGCGG-GCUGGU-CGGCGauguCGCAGgCCg -3'
miRNA:   3'- gCGCCgCGACUAcGCCGC----GUGUCgGG- -5'
28055 5' -61.9 NC_005887.1 + 37028 0.68 0.242755
Target:  5'- aCGuCGGgauaCUGGU-CGGCGCugAGCCCc -3'
miRNA:   3'- -GC-GCCgc--GACUAcGCCGCGugUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.