miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 21524 0.67 0.614788
Target:  5'- cGACGCCGGCugccgGgaaauucacgacgcuGCAGGCgaCCGGCGc- -3'
miRNA:   3'- -CUGCGGCUG-----U---------------UGUCCGaaGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 18952 0.67 0.610217
Target:  5'- cGCGCUG-CuGC-GGCUgCCAGCGGCa -3'
miRNA:   3'- cUGCGGCuGuUGuCCGAaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 37726 0.67 0.610217
Target:  5'- cGCGCCGGCGGCcaccGGCg-CC-GCGGCg -3'
miRNA:   3'- cUGCGGCUGUUGu---CCGaaGGuCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 36530 0.67 0.610217
Target:  5'- --gGgCGGCGGCAGGUauuucgcgaaUUCCGGCAGg -3'
miRNA:   3'- cugCgGCUGUUGUCCG----------AAGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 15772 0.67 0.610217
Target:  5'- cGGCGCCGucuacaAGCAGGaggacgaCGGCAGCg -3'
miRNA:   3'- -CUGCGGCug----UUGUCCgaag---GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 2328 0.67 0.60679
Target:  5'- -uCGCUGGCAucuauggcgauccgGCGGGCgaCCAGCGcucGCa -3'
miRNA:   3'- cuGCGGCUGU--------------UGUCCGaaGGUCGU---UG- -5'
28056 5' -54.3 NC_005887.1 + 26014 0.67 0.587422
Target:  5'- cGGCGUCGGgGGCgAGGCUaCCGGgGAUu -3'
miRNA:   3'- -CUGCGGCUgUUG-UCCGAaGGUCgUUG- -5'
28056 5' -54.3 NC_005887.1 + 32051 0.67 0.580612
Target:  5'- cGACGCCcgcagacggaaacggGACAcacccAUAGGCguagUCCAGCGc- -3'
miRNA:   3'- -CUGCGG---------------CUGU-----UGUCCGa---AGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 18171 0.67 0.576081
Target:  5'- cGACGCUGugGGCggcuaucgaucGGGCgUUCCuGCGAg -3'
miRNA:   3'- -CUGCGGCugUUG-----------UCCG-AAGGuCGUUg -5'
28056 5' -54.3 NC_005887.1 + 39345 0.67 0.576081
Target:  5'- cGGCGCUGGCcGCAGGCgcgUUgacggacgaagaAGCGACg -3'
miRNA:   3'- -CUGCGGCUGuUGUCCGaa-GG------------UCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 18796 0.67 0.564789
Target:  5'- --gGCCGGCGauGCGGGCggcgUCAGCGuACg -3'
miRNA:   3'- cugCGGCUGU--UGUCCGaa--GGUCGU-UG- -5'
28056 5' -54.3 NC_005887.1 + 14620 0.67 0.564789
Target:  5'- cGGCGCCGuCGA-GGGCgcgcUCaCGGCAGCc -3'
miRNA:   3'- -CUGCGGCuGUUgUCCGa---AG-GUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 28165 0.67 0.564789
Target:  5'- cACGCCGACu---GGUcgUCgAGCAACa -3'
miRNA:   3'- cUGCGGCUGuuguCCGa-AGgUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 13780 0.68 0.554677
Target:  5'- cGCGuCCGcGCAGCGGGCggcgacgccuacaaaUUCAGCAGCc -3'
miRNA:   3'- cUGC-GGC-UGUUGUCCGa--------------AGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 8211 0.68 0.553556
Target:  5'- cGCGCacCGACAcgcGCGGGCUgUUCAGCAu- -3'
miRNA:   3'- cUGCG--GCUGU---UGUCCGA-AGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 3501 0.68 0.553556
Target:  5'- cGACGUCGGCAA-GGGCaucgUCUAccGCAACg -3'
miRNA:   3'- -CUGCGGCUGUUgUCCGa---AGGU--CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 36754 0.68 0.531301
Target:  5'- cGAUGCCGcGCGGCAGGUU-CCAaaGGCg -3'
miRNA:   3'- -CUGCGGC-UGUUGUCCGAaGGUcgUUG- -5'
28056 5' -54.3 NC_005887.1 + 15498 0.68 0.520295
Target:  5'- uGC-CCGGCGGCAacGGCUaCCGGCAGa -3'
miRNA:   3'- cUGcGGCUGUUGU--CCGAaGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 18558 0.68 0.509379
Target:  5'- cGGCGCCGGCuucGCGGGCgacaugcucgUCgCGGCGu- -3'
miRNA:   3'- -CUGCGGCUGu--UGUCCGa---------AG-GUCGUug -5'
28056 5' -54.3 NC_005887.1 + 12162 0.68 0.508292
Target:  5'- --gGCCGGCGagaaguggaagcuGCAGGCgUUCC-GCGACu -3'
miRNA:   3'- cugCGGCUGU-------------UGUCCG-AAGGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.