miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 41821 0.67 0.701395
Target:  5'- cGGCGcGCGGCgGCCgACGcGUUCAGa- -3'
miRNA:   3'- cCCGC-CGCUG-CGGaUGUuUAAGUCgu -5'
28057 5' -53.4 NC_005887.1 + 7622 0.67 0.701395
Target:  5'- uGGGCGGCGACuG-CUGCccGUUCAa-- -3'
miRNA:   3'- -CCCGCCGCUG-CgGAUGuuUAAGUcgu -5'
28057 5' -53.4 NC_005887.1 + 29040 0.67 0.700276
Target:  5'- cGGcCGGCGuugccgaACGCCUGgcCGAucugGUUCAGCGc -3'
miRNA:   3'- cCC-GCCGC-------UGCGGAU--GUU----UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 32426 0.67 0.690182
Target:  5'- cGGCGGCGAUgugGCCggcgGCGA--UCAGg- -3'
miRNA:   3'- cCCGCCGCUG---CGGa---UGUUuaAGUCgu -5'
28057 5' -53.4 NC_005887.1 + 37697 0.67 0.678909
Target:  5'- -uGCaaGCGACGCCggggGCGAucagGUUCAGCGc -3'
miRNA:   3'- ccCGc-CGCUGCGGa---UGUU----UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 35155 0.67 0.678909
Target:  5'- cGGGCGGCcgucACGCUgcACGAucUCGGCc -3'
miRNA:   3'- -CCCGCCGc---UGCGGa-UGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 11402 0.67 0.667589
Target:  5'- uGGCGGcCGGCGCCgccaagGCAucgUCugAGCGc -3'
miRNA:   3'- cCCGCC-GCUGCGGa-----UGUuuaAG--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 2030 0.67 0.656233
Target:  5'- cGGCGGCGaACGUCU------UCGGCAu -3'
miRNA:   3'- cCCGCCGC-UGCGGAuguuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 16709 0.67 0.656233
Target:  5'- uGGCGGUGAagcucaaCCUGCAca-UCAGCAu -3'
miRNA:   3'- cCCGCCGCUgc-----GGAUGUuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 10097 0.67 0.656233
Target:  5'- uGGGCGGCccGCGCCgACGGc--CAGCu -3'
miRNA:   3'- -CCCGCCGc-UGCGGaUGUUuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 17535 0.67 0.644853
Target:  5'- aGGGCGGCauGACGUCgg-----UCGGCGc -3'
miRNA:   3'- -CCCGCCG--CUGCGGauguuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 18927 0.68 0.638018
Target:  5'- cGGGCGGCugcgacgagcugaucGACGCgCUGCug---CGGCu -3'
miRNA:   3'- -CCCGCCG---------------CUGCG-GAUGuuuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 39390 0.68 0.63346
Target:  5'- aGGcCGGCGGCGCaaccguggucGCGAccgcGUUCGGCAu -3'
miRNA:   3'- cCC-GCCGCUGCGga--------UGUU----UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 39276 0.68 0.622067
Target:  5'- uGGuCGGCGuucaGCGCCUGCAGGaUCuucGCGu -3'
miRNA:   3'- cCC-GCCGC----UGCGGAUGUUUaAGu--CGU- -5'
28057 5' -53.4 NC_005887.1 + 10150 0.68 0.622067
Target:  5'- cGGCcggaGCGACGUCUACGGcuggcaUCGGCAu -3'
miRNA:   3'- cCCGc---CGCUGCGGAUGUUua----AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 29800 0.68 0.599318
Target:  5'- cGGCGGCcgucGACGCCacguccUugAAGUugUCGGCGa -3'
miRNA:   3'- cCCGCCG----CUGCGG------AugUUUA--AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11780 0.69 0.576689
Target:  5'- cGGCGGCGuccuCGCUgcucgGCGGcgUCGGUu -3'
miRNA:   3'- cCCGCCGCu---GCGGa----UGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 39441 0.69 0.563201
Target:  5'- uGGCGGCGGCGUCguucg---CGGCGg -3'
miRNA:   3'- cCCGCCGCUGCGGauguuuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 28332 0.69 0.554256
Target:  5'- cGGCGGCG-CGCCggcgguUGCGGAggcgcgCGGCGc -3'
miRNA:   3'- cCCGCCGCuGCGG------AUGUUUaa----GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11912 0.69 0.553141
Target:  5'- cGGCGGgGcucACGUCUggcgugaACAAGUUCGGCu -3'
miRNA:   3'- cCCGCCgC---UGCGGA-------UGUUUAAGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.