miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28059 5' -56.3 NC_005887.1 + 14567 0.69 0.410494
Target:  5'- gUCGgcGCCGUCGucAUGG-CGCUcuACCUc -3'
miRNA:   3'- aAGCauCGGCAGC--UGCCaGCGA--UGGG- -5'
28059 5' -56.3 NC_005887.1 + 22190 0.69 0.401176
Target:  5'- uUUCGUuucuGuCCGgcgCGGCGGUCGCauauuacggugGCCCg -3'
miRNA:   3'- -AAGCAu---C-GGCa--GCUGCCAGCGa----------UGGG- -5'
28059 5' -56.3 NC_005887.1 + 14532 0.69 0.401176
Target:  5'- -gCGcGGCCGUCGGCGG-CGCgucgAUCg -3'
miRNA:   3'- aaGCaUCGGCAGCUGCCaGCGa---UGGg -5'
28059 5' -56.3 NC_005887.1 + 15072 0.69 0.391994
Target:  5'- gUCGccgaagggAGCCGcCGGCGuGUCGCagaugaUGCCCg -3'
miRNA:   3'- aAGCa-------UCGGCaGCUGC-CAGCG------AUGGG- -5'
28059 5' -56.3 NC_005887.1 + 40278 0.7 0.365282
Target:  5'- -cCGgcuuGCCGUCGACGacgaacccguaGUCGUUGCCg -3'
miRNA:   3'- aaGCau--CGGCAGCUGC-----------CAGCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 41780 0.71 0.300384
Target:  5'- gUCGU-GCCGaCGugGGUCGCguucaUGCCa -3'
miRNA:   3'- aAGCAuCGGCaGCugCCAGCG-----AUGGg -5'
28059 5' -56.3 NC_005887.1 + 33707 0.72 0.292928
Target:  5'- uUUCGUGGCg--CGGCGGUCGauCUGCUCg -3'
miRNA:   3'- -AAGCAUCGgcaGCUGCCAGC--GAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 31021 0.72 0.285617
Target:  5'- -gCGUaccGGCCGUCGcgguuGCGGcgcUCGCUGCCg -3'
miRNA:   3'- aaGCA---UCGGCAGC-----UGCC---AGCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 33630 0.72 0.278451
Target:  5'- cUUCGUGGCCG-CGACGaagCGCUuACCg -3'
miRNA:   3'- -AAGCAUCGGCaGCUGCca-GCGA-UGGg -5'
28059 5' -56.3 NC_005887.1 + 14618 0.72 0.26455
Target:  5'- gUCGgcGCCGUCGAgGG-CGC-GCUCa -3'
miRNA:   3'- aAGCauCGGCAGCUgCCaGCGaUGGG- -5'
28059 5' -56.3 NC_005887.1 + 23404 0.73 0.251217
Target:  5'- aUCGUgcguuauuGGCCGcCGACGGcCGCUGCg- -3'
miRNA:   3'- aAGCA--------UCGGCaGCUGCCaGCGAUGgg -5'
28059 5' -56.3 NC_005887.1 + 36927 0.74 0.220305
Target:  5'- -gCGUGGUCG-CGcCGGUCGCUgcggcgccGCCCg -3'
miRNA:   3'- aaGCAUCGGCaGCuGCCAGCGA--------UGGG- -5'
28059 5' -56.3 NC_005887.1 + 35084 0.74 0.214526
Target:  5'- -cCGgGGCCGaugUCG-CGGUCGCUGCCg -3'
miRNA:   3'- aaGCaUCGGC---AGCuGCCAGCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 8013 0.74 0.196371
Target:  5'- -cCGUGGCCGgCGccACGGcacaaaacccuuucUCGCUACCCg -3'
miRNA:   3'- aaGCAUCGGCaGC--UGCC--------------AGCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 12254 0.75 0.182529
Target:  5'- -gCGUAGCCGUCGaaGCGGUCGacaaguacaUGCgCCa -3'
miRNA:   3'- aaGCAUCGGCAGC--UGCCAGCg--------AUG-GG- -5'
28059 5' -56.3 NC_005887.1 + 26938 0.75 0.168167
Target:  5'- -aCGUAuGCgCGUCGACGaucCGCUGCCCg -3'
miRNA:   3'- aaGCAU-CG-GCAGCUGCca-GCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 13460 1.09 0.000658
Target:  5'- aUUCGUAGCCGUCGACGGUCGCUACCCc -3'
miRNA:   3'- -AAGCAUCGGCAGCUGCCAGCGAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.