miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28060 3' -45.9 NC_005887.1 + 3529 0.66 0.981896
Target:  5'- cGGUAGUCAUggcuuugugCUGCGCGuugucGGCGAUa -3'
miRNA:   3'- uUCAUUAGUAa--------GGCGUGCu----UCGUUAg -5'
28060 3' -45.9 NC_005887.1 + 40843 0.67 0.973501
Target:  5'- cGGGUAcgUGUUCCGCACGGccGCGc-- -3'
miRNA:   3'- -UUCAUuaGUAAGGCGUGCUu-CGUuag -5'
28060 3' -45.9 NC_005887.1 + 17634 0.68 0.958347
Target:  5'- gAAGUGcgcaagGUCAcgCCGCugGAuaucauccaGGCGGUCg -3'
miRNA:   3'- -UUCAU------UAGUaaGGCGugCU---------UCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 38561 0.68 0.953784
Target:  5'- -------uGUUCUGCACGAuGCGGUCg -3'
miRNA:   3'- uucauuagUAAGGCGUGCUuCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 40735 0.68 0.953784
Target:  5'- ---aGGUCGccgcCCGCGuCGAGGCGAUCg -3'
miRNA:   3'- uucaUUAGUaa--GGCGU-GCUUCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 22982 0.68 0.943672
Target:  5'- cGAGuUGAUCGUcgCCGCACGcgucugcugcgcGAGCAugGUCa -3'
miRNA:   3'- -UUC-AUUAGUAa-GGCGUGC------------UUCGU--UAG- -5'
28060 3' -45.9 NC_005887.1 + 27038 0.68 0.943132
Target:  5'- gAGGUAAUUGUUCaCGCGguCGAgguaugcGGCAGUCu -3'
miRNA:   3'- -UUCAUUAGUAAG-GCGU--GCU-------UCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 33504 0.69 0.931609
Target:  5'- -cGU--UCAgcaUCCGCGCGAucuugucGGCGAUCa -3'
miRNA:   3'- uuCAuuAGUa--AGGCGUGCU-------UCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 32276 0.71 0.864014
Target:  5'- --aUGAUCcggUCCaCACGggGCGAUCg -3'
miRNA:   3'- uucAUUAGua-AGGcGUGCuuCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 17511 0.73 0.749396
Target:  5'- --cUGAUCGccgacUUCCGCACGAAGCGc-- -3'
miRNA:   3'- uucAUUAGU-----AAGGCGUGCUUCGUuag -5'
28060 3' -45.9 NC_005887.1 + 1383 0.73 0.749396
Target:  5'- -cGUAcAUCAggcCCGCGcCGAAGCGGUCg -3'
miRNA:   3'- uuCAU-UAGUaa-GGCGU-GCUUCGUUAG- -5'
28060 3' -45.9 NC_005887.1 + 13329 1.1 0.005168
Target:  5'- gAAGUAAUCAUUCCGCACGAAGCAAUCg -3'
miRNA:   3'- -UUCAUUAGUAAGGCGUGCUUCGUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.