miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28061 5' -47.9 NC_005887.1 + 13734 0.66 0.9726
Target:  5'- gAACAUCgu-CGCGAugccguacggcugGCGcGAGGACGAu -3'
miRNA:   3'- gUUGUGGauuGUGCU-------------UGC-CUCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 14353 0.66 0.971966
Target:  5'- aAACGCCggccgacGACGCGAuucggcccgagccgGCGGcggcaAGAGCGAu -3'
miRNA:   3'- gUUGUGGa------UUGUGCU--------------UGCC-----UCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 27860 0.66 0.966145
Target:  5'- aAGCACCgcggcgGGCACGAucuGCGcGAGGcccgacACGAc -3'
miRNA:   3'- gUUGUGGa-----UUGUGCU---UGC-CUCU------UGCU- -5'
28061 5' -47.9 NC_005887.1 + 13652 0.66 0.966145
Target:  5'- gCAGCACCgacgugcagAACGCGAucaGCGGcGcGACGGg -3'
miRNA:   3'- -GUUGUGGa--------UUGUGCU---UGCCuC-UUGCU- -5'
28061 5' -47.9 NC_005887.1 + 21382 0.66 0.962348
Target:  5'- uGGCGCCaAGCGCcAGCGcGGGAACa- -3'
miRNA:   3'- gUUGUGGaUUGUGcUUGC-CUCUUGcu -5'
28061 5' -47.9 NC_005887.1 + 4351 0.67 0.958265
Target:  5'- uCGACGCC-GGCGCGGAUGuGGAuguCGAg -3'
miRNA:   3'- -GUUGUGGaUUGUGCUUGCcUCUu--GCU- -5'
28061 5' -47.9 NC_005887.1 + 8213 0.67 0.956984
Target:  5'- -cGCACC-GACACGcGCGGgcuguucagcaucgAGAACGGc -3'
miRNA:   3'- guUGUGGaUUGUGCuUGCC--------------UCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 34347 0.67 0.949213
Target:  5'- uGGCGCCggcCACGGcUGGAGA-CGAg -3'
miRNA:   3'- gUUGUGGauuGUGCUuGCCUCUuGCU- -5'
28061 5' -47.9 NC_005887.1 + 6175 0.67 0.949213
Target:  5'- aAGCGCCUcGACcCGAACGGgaAGGuCGAc -3'
miRNA:   3'- gUUGUGGA-UUGuGCUUGCC--UCUuGCU- -5'
28061 5' -47.9 NC_005887.1 + 16160 0.67 0.944232
Target:  5'- -cGCGCCgaguGCGCGAGCGaucGAG-GCGAa -3'
miRNA:   3'- guUGUGGau--UGUGCUUGC---CUCuUGCU- -5'
28061 5' -47.9 NC_005887.1 + 15771 0.67 0.944232
Target:  5'- aCGGCGCCgucUACaAGCaGGAGGACGAc -3'
miRNA:   3'- -GUUGUGGauuGUGcUUG-CCUCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 5173 0.67 0.944232
Target:  5'- gGACGCCgAGC-CGAcGCaGGAGAACGu -3'
miRNA:   3'- gUUGUGGaUUGuGCU-UG-CCUCUUGCu -5'
28061 5' -47.9 NC_005887.1 + 10177 0.68 0.907797
Target:  5'- uCGGCAUCcgGACGCGAACGGuuucguCGAg -3'
miRNA:   3'- -GUUGUGGa-UUGUGCUUGCCucuu--GCU- -5'
28061 5' -47.9 NC_005887.1 + 1613 0.69 0.900632
Target:  5'- gCGAuCGCCUcGACGCGGGCGGcGAccuCGAa -3'
miRNA:   3'- -GUU-GUGGA-UUGUGCUUGCCuCUu--GCU- -5'
28061 5' -47.9 NC_005887.1 + 23308 0.69 0.885391
Target:  5'- aCAACGCCgcACuGCGGcccaauCGGAGAACGc -3'
miRNA:   3'- -GUUGUGGauUG-UGCUu-----GCCUCUUGCu -5'
28061 5' -47.9 NC_005887.1 + 3893 0.69 0.877326
Target:  5'- aCGACGCCaugccgGAUguGCGGAUGGcGAACGAc -3'
miRNA:   3'- -GUUGUGGa-----UUG--UGCUUGCCuCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 35145 0.69 0.877326
Target:  5'- aCAGCGCCUGcgcACGCGAGaauucGAGAAgCGAg -3'
miRNA:   3'- -GUUGUGGAU---UGUGCUUgc---CUCUU-GCU- -5'
28061 5' -47.9 NC_005887.1 + 22132 0.69 0.868973
Target:  5'- aGAUugCUAccgaaaGCAacgGAugGGAGAGCGAu -3'
miRNA:   3'- gUUGugGAU------UGUg--CUugCCUCUUGCU- -5'
28061 5' -47.9 NC_005887.1 + 3953 0.71 0.792915
Target:  5'- gCAGCGCaCUGAC-CGAAcCGGAGAucgcaaugugcaACGAa -3'
miRNA:   3'- -GUUGUG-GAUUGuGCUU-GCCUCU------------UGCU- -5'
28061 5' -47.9 NC_005887.1 + 29279 0.71 0.78242
Target:  5'- -uACACCUAACACGGACGuacAGcAACGc -3'
miRNA:   3'- guUGUGGAUUGUGCUUGCc--UC-UUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.