Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28062 | 3' | -56.8 | NC_005887.1 | + | 10902 | 0.66 | 0.56476 |
Target: 5'- aGCGGACcUCgcaugaAGCU-CUGGCUCGAc -3' miRNA: 3'- gCGUCUGaAGg-----UCGAuGACCGGGCUc -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 5890 | 0.66 | 0.542898 |
Target: 5'- uGCAGACUUgaCCGcuGCggGCUGGCCgaaGGGc -3' miRNA: 3'- gCGUCUGAA--GGU--CGa-UGACCGGg--CUC- -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 10914 | 0.66 | 0.532071 |
Target: 5'- gCGCAGAUgacgucggCCGGcCUGCUcacGCCCGAu -3' miRNA: 3'- -GCGUCUGaa------GGUC-GAUGAc--CGGGCUc -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 26448 | 0.66 | 0.521323 |
Target: 5'- aCGCAGGuCggCCAGCUGCgcgucgaGcGCaCCGAGc -3' miRNA: 3'- -GCGUCU-GaaGGUCGAUGa------C-CG-GGCUC- -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 38032 | 0.67 | 0.448812 |
Target: 5'- uGCGGcAUgUCCGGCaGCUGGCCggccucggCGAGg -3' miRNA: 3'- gCGUC-UGaAGGUCGaUGACCGG--------GCUC- -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 28823 | 0.73 | 0.213045 |
Target: 5'- aGCAGA---UCGGCgcggUACUGGCCCGGGa -3' miRNA: 3'- gCGUCUgaaGGUCG----AUGACCGGGCUC- -5' |
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28062 | 3' | -56.8 | NC_005887.1 | + | 12550 | 1.08 | 0.000552 |
Target: 5'- cCGCAGACUUCCAGCUACUGGCCCGAGc -3' miRNA: 3'- -GCGUCUGAAGGUCGAUGACCGGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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