miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28062 5' -58.7 NC_005887.1 + 14699 0.68 0.319872
Target:  5'- cUCgUCGCGGcgGGCggGCCGGGCGc- -3'
miRNA:   3'- -AGgAGCGCUagUCGagCGGCCCGUuc -5'
28062 5' -58.7 NC_005887.1 + 41283 0.68 0.319872
Target:  5'- aCCUgcgcacgggCGCGcugCuGC-CGCCGGGCAAGg -3'
miRNA:   3'- aGGA---------GCGCua-GuCGaGCGGCCCGUUC- -5'
28062 5' -58.7 NC_005887.1 + 41439 0.69 0.312117
Target:  5'- gCCUCGUGGgcuaugcgcugcUCGGCaCGCCGcGCGAGg -3'
miRNA:   3'- aGGAGCGCU------------AGUCGaGCGGCcCGUUC- -5'
28062 5' -58.7 NC_005887.1 + 28779 0.69 0.304506
Target:  5'- cUCCuUCGCGucGUCGGCcUGCuCGGGCGGc -3'
miRNA:   3'- -AGG-AGCGC--UAGUCGaGCG-GCCCGUUc -5'
28062 5' -58.7 NC_005887.1 + 28442 0.69 0.288989
Target:  5'- -gCUCGCGAagcugacccuucgUCGGCUuguUGCCGGGCc-- -3'
miRNA:   3'- agGAGCGCU-------------AGUCGA---GCGGCCCGuuc -5'
28062 5' -58.7 NC_005887.1 + 13670 0.7 0.275491
Target:  5'- ---aCGCGAUCAGCggCGCgaCGGGUggGa -3'
miRNA:   3'- aggaGCGCUAGUCGa-GCG--GCCCGuuC- -5'
28062 5' -58.7 NC_005887.1 + 36977 0.7 0.255211
Target:  5'- gCgUCGCGcggGUCgAGCUCGCC-GGCGAGc -3'
miRNA:   3'- aGgAGCGC---UAG-UCGAGCGGcCCGUUC- -5'
28062 5' -58.7 NC_005887.1 + 30742 0.71 0.235559
Target:  5'- cCUUCGCGAcuucgccgucggUCAGCUCGaCCGugcgcgcGGCGAGu -3'
miRNA:   3'- aGGAGCGCU------------AGUCGAGC-GGC-------CCGUUC- -5'
28062 5' -58.7 NC_005887.1 + 31115 0.75 0.107168
Target:  5'- aUCUCGCaGAgcagggCgAGCUUGCCGGGCAGGc -3'
miRNA:   3'- aGGAGCG-CUa-----G-UCGAGCGGCCCGUUC- -5'
28062 5' -58.7 NC_005887.1 + 12592 1.09 0.000307
Target:  5'- aUCCUCGCGAUCAGCUCGCCGGGCAAGa -3'
miRNA:   3'- -AGGAGCGCUAGUCGAGCGGCCCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.