miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28063 3' -54.2 NC_005887.1 + 26031 0.66 0.690413
Target:  5'- --cGcgGcGACCUCGAacaggcCGGCGUCCuGCGu -3'
miRNA:   3'- guuCuaC-CUGGAGCU------GUCGUAGG-CGC- -5'
28063 3' -54.2 NC_005887.1 + 39403 0.66 0.690413
Target:  5'- gAGGAUGG-UCgCGGCGGUG-CCGCGg -3'
miRNA:   3'- gUUCUACCuGGaGCUGUCGUaGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 26684 0.67 0.65676
Target:  5'- uGAGcUGGucgAgCUCGGCGcGCAUCUGCGa -3'
miRNA:   3'- gUUCuACC---UgGAGCUGU-CGUAGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 6044 0.67 0.611601
Target:  5'- -cGGGUGGugCUggUGGCAGCGg-CGCGg -3'
miRNA:   3'- guUCUACCugGA--GCUGUCGUagGCGC- -5'
28063 3' -54.2 NC_005887.1 + 41514 0.69 0.511961
Target:  5'- gCAAGucgacGGugCUCGGCAagAUCCGCGa -3'
miRNA:   3'- -GUUCua---CCugGAGCUGUcgUAGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 29492 0.69 0.511961
Target:  5'- --cGAUGucguagccggcGGCCUCGACGGCGggCGCGu -3'
miRNA:   3'- guuCUAC-----------CUGGAGCUGUCGUagGCGC- -5'
28063 3' -54.2 NC_005887.1 + 13403 0.69 0.501257
Target:  5'- --cGgcGGACgUCGGCGGCAagCCGCu -3'
miRNA:   3'- guuCuaCCUGgAGCUGUCGUa-GGCGc -5'
28063 3' -54.2 NC_005887.1 + 15787 0.69 0.501257
Target:  5'- gCAGGA-GGACgaCGGCAGCGacaCCGCa -3'
miRNA:   3'- -GUUCUaCCUGgaGCUGUCGUa--GGCGc -5'
28063 3' -54.2 NC_005887.1 + 29236 0.69 0.501257
Target:  5'- uCGAGGUGucGACCuUCGgcacgcccuGCAGCAcUCCGCGa -3'
miRNA:   3'- -GUUCUAC--CUGG-AGC---------UGUCGU-AGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 11528 0.69 0.490654
Target:  5'- -cAGAUGGACgUCGAacuGGCcgaggCCGCGg -3'
miRNA:   3'- guUCUACCUGgAGCUg--UCGua---GGCGC- -5'
28063 3' -54.2 NC_005887.1 + 32847 0.69 0.490654
Target:  5'- --cGAcGGugUUCGGCAGCAUgCCGgGg -3'
miRNA:   3'- guuCUaCCugGAGCUGUCGUA-GGCgC- -5'
28063 3' -54.2 NC_005887.1 + 14424 0.7 0.469768
Target:  5'- uCAAGccGGACC-CGACGcgcGCAaCCGCGa -3'
miRNA:   3'- -GUUCuaCCUGGaGCUGU---CGUaGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 23932 0.71 0.410029
Target:  5'- --cGAUGacgucGGCCUCG-CGGCGUCUGCGc -3'
miRNA:   3'- guuCUAC-----CUGGAGCuGUCGUAGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 20267 0.72 0.346633
Target:  5'- -cAGAaGGGCCcCGACGGCcgCCGUGc -3'
miRNA:   3'- guUCUaCCUGGaGCUGUCGuaGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 16837 0.73 0.329856
Target:  5'- --cGAUGGAgCgCGACAuCAUCCGCGa -3'
miRNA:   3'- guuCUACCUgGaGCUGUcGUAGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 11769 0.73 0.298123
Target:  5'- --cGGUgGGAUCUCGGCGGCGUCCuCGc -3'
miRNA:   3'- guuCUA-CCUGGAGCUGUCGUAGGcGC- -5'
28063 3' -54.2 NC_005887.1 + 7258 0.74 0.268808
Target:  5'- ------cGACCUCGGCAGCGaCCGCGa -3'
miRNA:   3'- guucuacCUGGAGCUGUCGUaGGCGC- -5'
28063 3' -54.2 NC_005887.1 + 12365 1.08 0.001035
Target:  5'- aCAAGAUGGACCUCGACAGCAUCCGCGc -3'
miRNA:   3'- -GUUCUACCUGGAGCUGUCGUAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.