Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28064 | 3' | -53.9 | NC_005887.1 | + | 778 | 0.69 | 0.545105 |
Target: 5'- uGGcCGACAGGaACGUcucgGCGCUGGCUg -3' miRNA: 3'- gCCaGCUGUUCaUGUA----CGCGGUCGAg -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 1110 | 0.69 | 0.545105 |
Target: 5'- -cGcCGAgCAGGUGCGUGUGCUugucgAGCUCg -3' miRNA: 3'- gcCaGCU-GUUCAUGUACGCGG-----UCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 1405 | 0.67 | 0.612655 |
Target: 5'- gCGGUCGA-----GCAUGCGCuCGGCg- -3' miRNA: 3'- -GCCAGCUguucaUGUACGCG-GUCGag -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 5110 | 0.66 | 0.703267 |
Target: 5'- uGGaCGACgAGGUGCu--CGCCaAGCUCg -3' miRNA: 3'- gCCaGCUG-UUCAUGuacGCGG-UCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 6180 | 0.66 | 0.692073 |
Target: 5'- cCGGUCGGCAcGGUGac-GCGCC-GCg- -3' miRNA: 3'- -GCCAGCUGU-UCAUguaCGCGGuCGag -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 8081 | 0.67 | 0.624033 |
Target: 5'- uGGUCGuucACGAaaGCGcGCGCgCAGCUCg -3' miRNA: 3'- gCCAGC---UGUUcaUGUaCGCG-GUCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 9050 | 0.73 | 0.3023 |
Target: 5'- ---cCGACGAGUACguacgcggauggaaGUGCGCCGGCUg -3' miRNA: 3'- gccaGCUGUUCAUG--------------UACGCGGUCGAg -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 11027 | 0.69 | 0.489653 |
Target: 5'- cCGGUCGGCAcGUGgGacgugaccaccggUGCGCCgaugccggucgAGCUCg -3' miRNA: 3'- -GCCAGCUGUuCAUgU-------------ACGCGG-----------UCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 11605 | 0.66 | 0.714386 |
Target: 5'- uCGGcgcUCGACAcgcaGGUGCAgagcgUGCGCaaugccgAGCUCg -3' miRNA: 3'- -GCC---AGCUGU----UCAUGU-----ACGCGg------UCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 12268 | 1.11 | 0.000699 |
Target: 5'- gCGGUCGACAAGUACAUGCGCCAGCUCg -3' miRNA: 3'- -GCCAGCUGUUCAUGUACGCGGUCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 12868 | 0.68 | 0.567421 |
Target: 5'- aGGcacgaccgUGGCAGGUGcCGUGCGCgAGCUg -3' miRNA: 3'- gCCa-------GCUGUUCAU-GUACGCGgUCGAg -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 14084 | 0.66 | 0.692073 |
Target: 5'- cCGGUCGAUucgcuGUACGccgaccagacCGCCAGCUUu -3' miRNA: 3'- -GCCAGCUGuu---CAUGUac--------GCGGUCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 15719 | 0.66 | 0.680818 |
Target: 5'- cCGG-CGugAAGgaGCugacGCGCCAGCUg -3' miRNA: 3'- -GCCaGCugUUCa-UGua--CGCGGUCGAg -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 16122 | 0.66 | 0.692073 |
Target: 5'- gCGGaUCGGacc---CGUGCGCCAGCUg -3' miRNA: 3'- -GCC-AGCUguucauGUACGCGGUCGAg -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 18399 | 0.68 | 0.578668 |
Target: 5'- aGGUCGuc-GGUGCGUGCGCagaCGGC-Cg -3' miRNA: 3'- gCCAGCuguUCAUGUACGCG---GUCGaG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 18547 | 0.67 | 0.646802 |
Target: 5'- uCGGUgGGCG---GCG-GCGCCGGCUUc -3' miRNA: 3'- -GCCAgCUGUucaUGUaCGCGGUCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 18794 | 0.66 | 0.703267 |
Target: 5'- cCGGcCGGCGA-UGCGggcgGCGUCAGCg- -3' miRNA: 3'- -GCCaGCUGUUcAUGUa---CGCGGUCGag -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 19527 | 0.67 | 0.646802 |
Target: 5'- cCGGUUGAgCAcGUucGgAUGCGCCgcguAGCUCg -3' miRNA: 3'- -GCCAGCU-GUuCA--UgUACGCGG----UCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 21728 | 0.66 | 0.669513 |
Target: 5'- gGGaUUGGgAGGUGucuggUAUGUGCCAGUUCa -3' miRNA: 3'- gCC-AGCUgUUCAU-----GUACGCGGUCGAG- -5' |
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28064 | 3' | -53.9 | NC_005887.1 | + | 23252 | 0.66 | 0.669513 |
Target: 5'- gCGGUCGGCGc--GCAaaagGCGC-AGCUCg -3' miRNA: 3'- -GCCAGCUGUucaUGUa---CGCGgUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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