Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28065 | 3' | -64.4 | NC_005887.1 | + | 16462 | 0.67 | 0.19254 |
Target: 5'- cGGGCaugcgcucgaccgCGCGGCaggaucCGGCG-GGCUGGUCg -3' miRNA: 3'- uUCCG-------------GCGCUGc-----GCCGCaCCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 1487 | 0.67 | 0.188088 |
Target: 5'- -cGGCgUGCGGCGCucGCGcGGCgcGGCCg -3' miRNA: 3'- uuCCG-GCGCUGCGc-CGCaCCGa-CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 29026 | 0.67 | 0.187599 |
Target: 5'- cGAGauCCGCGAUGCGGCc-GGCguugccgaacgccUGGCCg -3' miRNA: 3'- -UUCc-GGCGCUGCGCCGcaCCG-------------ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 7028 | 0.67 | 0.183726 |
Target: 5'- --cGCCGCGgcGCGCGGCaGUGGagcgaugcagagaaGGCCg -3' miRNA: 3'- uucCGGCGC--UGCGCCG-CACCga------------CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 7715 | 0.67 | 0.183247 |
Target: 5'- -cGGCgCGCcucgucGACGCgaacGGCGaaUGGCUGGCg -3' miRNA: 3'- uuCCG-GCG------CUGCG----CCGC--ACCGACCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 35330 | 0.67 | 0.183247 |
Target: 5'- --uGCCGCGcgcCGCGGC--GGCcGGCCa -3' miRNA: 3'- uucCGGCGCu--GCGCCGcaCCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 10031 | 0.67 | 0.178517 |
Target: 5'- -cGGCgUGUGGuccuacgcacUGCGGCGcgccGGCUGGCCc -3' miRNA: 3'- uuCCG-GCGCU----------GCGCCGCa---CCGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17193 | 0.68 | 0.173895 |
Target: 5'- -cGGCCGC-ACGCGGCaauGUUGcGCCg -3' miRNA: 3'- uuCCGGCGcUGCGCCGcacCGAC-CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13392 | 0.68 | 0.169381 |
Target: 5'- gAAGGCCG--GCGCGGCGgacgucGGC-GGCa -3' miRNA: 3'- -UUCCGGCgcUGCGCCGCa-----CCGaCCGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 30473 | 0.68 | 0.160665 |
Target: 5'- cAGGCggugCGCGACGCGGCccGUGcGUUGcGCa -3' miRNA: 3'- uUCCG----GCGCUGCGCCG--CAC-CGAC-CGg -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 38162 | 0.68 | 0.152356 |
Target: 5'- cAGGCCgagcGCGAaauagGCGGUGUGcaGCaUGGCCg -3' miRNA: 3'- uUCCGG----CGCUg----CGCCGCAC--CG-ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 30996 | 0.68 | 0.152356 |
Target: 5'- cGGGgUGCGucucucGCGUGGCGcGGCgcaGGCCa -3' miRNA: 3'- uUCCgGCGC------UGCGCCGCaCCGa--CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13953 | 0.69 | 0.140622 |
Target: 5'- -cGGCUGCGACGUGcGCGUGaCgacaGCCg -3' miRNA: 3'- uuCCGGCGCUGCGC-CGCACcGac--CGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 41592 | 0.69 | 0.136899 |
Target: 5'- -cGGCCaGCGGCggcccagguGCGGCGgccGGCgcGGCCc -3' miRNA: 3'- uuCCGG-CGCUG---------CGCCGCa--CCGa-CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 26393 | 0.69 | 0.126265 |
Target: 5'- ---aCUGCGACaGCGGCGUgcGGCgcgUGGCCg -3' miRNA: 3'- uuccGGCGCUG-CGCCGCA--CCG---ACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 13593 | 0.7 | 0.124233 |
Target: 5'- gGAGGCCGCGuacuucaucgcugcuGgcagCGCGGCGcgcGGC-GGCCg -3' miRNA: 3'- -UUCCGGCGC---------------U----GCGCCGCa--CCGaCCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 6989 | 0.7 | 0.116401 |
Target: 5'- cAGGcCCGCGugGUgccgGGCGUGaaGCUcguGGCCg -3' miRNA: 3'- uUCC-GGCGCugCG----CCGCAC--CGA---CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 41442 | 0.7 | 0.116401 |
Target: 5'- cGGGUCGCGACGCGGauCGaaGCcgaGGCCg -3' miRNA: 3'- uUCCGGCGCUGCGCC--GCacCGa--CCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 39461 | 0.7 | 0.116401 |
Target: 5'- aAGGGCCGCGugccugaaaaGC-GCGUGuugccGCUGGCCa -3' miRNA: 3'- -UUCCGGCGCug--------CGcCGCAC-----CGACCGG- -5' |
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28065 | 3' | -64.4 | NC_005887.1 | + | 17299 | 0.7 | 0.113276 |
Target: 5'- -cGGCCaGCGGCacuGCGGCauggGUucugcgcuaccGGCUGGCCg -3' miRNA: 3'- uuCCGG-CGCUG---CGCCG----CA-----------CCGACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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