miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28065 5' -54.7 NC_005887.1 + 9070 0.66 0.675099
Target:  5'- uGGAAGUgcgccggcugcgGCGGGacgaaGUUUCGCGAgaUCa -3'
miRNA:   3'- -CCUUCGa-----------CGUCCg----CAAGGCGCUgaAG- -5'
28065 5' -54.7 NC_005887.1 + 7560 0.66 0.666106
Target:  5'- aGGAuccGGCcucgugGCAGGCGUaUCCGgaCGGCaUCg -3'
miRNA:   3'- -CCU---UCGa-----CGUCCGCA-AGGC--GCUGaAG- -5'
28065 5' -54.7 NC_005887.1 + 11040 0.66 0.666106
Target:  5'- gGGAgaaccgGGC-GCAGGCGUggacacugauuUCCGCGccGCUgcUCa -3'
miRNA:   3'- -CCU------UCGaCGUCCGCA-----------AGGCGC--UGA--AG- -5'
28065 5' -54.7 NC_005887.1 + 14518 0.66 0.666106
Target:  5'- uGGuccGCuUGCAGGCGcggccgUCgGCGGCgcgUCg -3'
miRNA:   3'- -CCuu-CG-ACGUCCGCa-----AGgCGCUGa--AG- -5'
28065 5' -54.7 NC_005887.1 + 36548 0.67 0.620937
Target:  5'- ---cGCgaauuccgGCAGGCGUUCgUGCGccuGCUUCg -3'
miRNA:   3'- ccuuCGa-------CGUCCGCAAG-GCGC---UGAAG- -5'
28065 5' -54.7 NC_005887.1 + 17652 0.67 0.609644
Target:  5'- uGAAGCUGCAGGgcaCGaUCCucgccgcgcuugGCGACgUCg -3'
miRNA:   3'- cCUUCGACGUCC---GCaAGG------------CGCUGaAG- -5'
28065 5' -54.7 NC_005887.1 + 13101 0.67 0.575928
Target:  5'- cGGAGuGCUGCAgGGCGUgCCGaagguCGACa-- -3'
miRNA:   3'- -CCUU-CGACGU-CCGCAaGGC-----GCUGaag -5'
28065 5' -54.7 NC_005887.1 + 34936 0.67 0.575928
Target:  5'- cGAGGCggcgGCGGGUGcgaCCGUGGCgaucgUCg -3'
miRNA:   3'- cCUUCGa---CGUCCGCaa-GGCGCUGa----AG- -5'
28065 5' -54.7 NC_005887.1 + 1435 0.68 0.553678
Target:  5'- -cGAGCUGCuggaAGGCGUUCCG-GAUc-- -3'
miRNA:   3'- ccUUCGACG----UCCGCAAGGCgCUGaag -5'
28065 5' -54.7 NC_005887.1 + 15912 0.68 0.520815
Target:  5'- cGGAucucgcgcGGCUGCAGcgcGCGUUCCcgcGCGGCc-- -3'
miRNA:   3'- -CCU--------UCGACGUC---CGCAAGG---CGCUGaag -5'
28065 5' -54.7 NC_005887.1 + 26960 0.69 0.457624
Target:  5'- aGAucCUGCAGGcCGUUCgGCGACg-- -3'
miRNA:   3'- cCUucGACGUCC-GCAAGgCGCUGaag -5'
28065 5' -54.7 NC_005887.1 + 30732 0.7 0.417853
Target:  5'- ---cGCUGCGuGGCc-UUCGCGACUUCg -3'
miRNA:   3'- ccuuCGACGU-CCGcaAGGCGCUGAAG- -5'
28065 5' -54.7 NC_005887.1 + 35060 0.71 0.37122
Target:  5'- aGGucGCUGCcgucgucGGCGgg-CGCGACUUCg -3'
miRNA:   3'- -CCuuCGACGu------CCGCaagGCGCUGAAG- -5'
28065 5' -54.7 NC_005887.1 + 18910 0.72 0.336554
Target:  5'- uGGAAGCggcgggaugGCGGGCGg-CUGCGACg-- -3'
miRNA:   3'- -CCUUCGa--------CGUCCGCaaGGCGCUGaag -5'
28065 5' -54.7 NC_005887.1 + 2237 0.74 0.247056
Target:  5'- ---cGCUGUAGGCGUcCUGCGGCUcgUCc -3'
miRNA:   3'- ccuuCGACGUCCGCAaGGCGCUGA--AG- -5'
28065 5' -54.7 NC_005887.1 + 29813 0.75 0.210207
Target:  5'- uGGAAGuCUGCGGGUGUg-CGCGGCg-- -3'
miRNA:   3'- -CCUUC-GACGUCCGCAagGCGCUGaag -5'
28065 5' -54.7 NC_005887.1 + 12175 1.12 0.000447
Target:  5'- uGGAAGCUGCAGGCGUUCCGCGACUUCg -3'
miRNA:   3'- -CCUUCGACGUCCGCAAGGCGCUGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.